Archive

A list of publications involving CSFG's contributions from 1996 to the present.

	2023 ∨	2022 ∨	2021 ∨	2020 ∨	2019 ∨	2018 ∨
2017 ∨	2016 ∨	2015 ∨	2014 ∨	2013 ∨	2012 ∨	2011 ∨
2010 ∨	2009 ∨	2008 ∨	2007 ∨	2006 ∨	2005 ∨	2004 ∨
2003 ∨	2002 ∨	2001 ∨	2000 ∨	1999 ∨	1998-96 ∨

2023

Najeh, S., Zandi, K., Perreault, J., & Kharma, N. (2023). Computational design and experimental verification of pseudoknotted ribozymes. RNA (New York, N.Y.). doi:10.1261/rna.079148.122
Mehta, O., Vijay, A., Gohir, S. A., Kelly, T., Zhang, W., Doherty, M., … Valdes, A. M. (2023). Serum Metabolome Analysis identified amino-acid metabolism associated with pain in people with symptomatic knee Osteoarthritis - a cross-sectional study. The Journal of Pain: Official Journal of the American Pain Society. doi:10.1016/j.jpain.2023.02.023
Pontarelli, A., & Wilds, C. J. (2023). Oligonucleotides containing C5-propynyl modified arabinonucleic acids: Synthesis, biophysical and antisense properties. Chembiochem: A European Journal of Chemical Biology, e202300068. doi:10.1002/cbic.202300068
Walsh, D. A., Rathbone, J., Akin-Akinyosoye, K., Fernandes, G. S., Valdes, A. M., McWilliams, D. F., … Ferguson, E. (2023). How people with knee pain understand why their pain changes or remains the same over time: A qualitative study. Osteoarthritis and Cartilage Open, 5(2), 100345. doi:10.1016/j.ocarto.2023.100345
Pontarelli, A., Liu, J. T., Oh, J. K., & Wilds, C. J. (2023). Preparation of a convertible spacer containing a disulfide group for versatile functionalization of oligonucleotides. Current Protocols, 3(2), e691. doi:10.1002/cpz1.691
Nortey, J., Tsang, A., Lopez, S., Gebreegziabher, E., Keenan, J. D., Lietman, T., & Gonzales, J. A. (2023). Central corneal subbasal nerve plexus abnormalities in Sjögren disease: A pilot study. Cornea. doi:10.1097/ICO.0000000000003248
Kaushik, P., Bharti, K., & Lee, J. S. (2023). Identification of the genes involved in stomatal development via epidermal phenotype scoring. Journal of Visualized Experiments: JoVE, (191). doi:10.3791/64899
Jager, K., Orozco-Hidalgo, M. T., Springstein, B. L., Joly-Smith, E., Papazotos, F., McDonough, E., … Potvin-Trottier, L. (2023). Measuring prion propagation in single bacteria elucidates mechanism of loss. BioRxiv.Org: The Preprint Server for Biology. doi:10.1101/2023.01.11.523042
Mohideen, F. I., & Kwan, D. H. (2023). A ‘biphasic glycosyltransferase high-throughput screen’ identifies novel anthraquinone glycosides in the diversification of phenolic natural products. The Journal of Biological Chemistry, 299(3), 102931. doi:10.1016/j.jbc.2023.102931
Oliva, A., Onana, V. E., Garner, R. E., Kraemer, S. A., Fradette, M., Walsh, D. A., & Huot, Y. (2023). Geospatial analysis reveals a hotspot of fecal bacteria in Canadian prairie lakes linked to agricultural non-point sources. Water Research, 231(119596), 119596. doi:10.1016/j.watres.2023.119596
Collins, J. T., Harwood, R. H., Cowley, A., Di Lorito, C., Ferguson, E., Minicucci, M. F., … Gladman, J. R. F. (2023). Chronic pain in people living with dementia: challenges to recognising and managing pain, and personalising intervention by phenotype. Age and Ageing, 52(1). doi:10.1093/ageing/afac306
Derba-Maceluch, M., Mitra, M., Hedenström, M., Liu, X., Gandla, M. L., Barbut, F. R., … Mellerowicz, E. J. (2023). Xylan glucuronic acid side chains fix suberin-like aliphatic compounds to wood cell walls. The New Phytologist, 238(1), 297–312. doi:10.1111/nph.18712
Galambo, D., & Bergdahl, A. (2023). Physiological levels of cardiolipin acutely affect mitochondrial respiration in vascular smooth muscle cells. Current Research in Physiology, 6(100097), 100097. doi:10.1016/j.crphys.2022.100097
Kékedy-Nagy, L., Perry, J. M., Little, S. R., Llorens, O. Y., & Shih, S. C. C. (2023). An electrochemical aptasensor for Δ9-tetrahydrocannabinol detection in saliva on a microfluidic platform. Biosensors & Bioelectronics, 222(114998), 114998. doi:10.1016/j.bios.2022.114998
Ali, D. A., Domínguez Mercado, L., Findlay, B. L., Badia, A., & DeWolf, C. (2023). Opposites attract: Electrostatically driven loading of antimicrobial peptides into phytoglycogen nanocarriers. Langmuir: The ACS Journal of Surfaces and Colloids, 39(1), 53–63. doi:10.1021/acs.langmuir.2c01794
Asadi, P., Milev, M. P., Saint-Dic, D., Gamberi, C., & Sacher, M. (2023). Vitamin B5, a coenzyme A precursor, rescues TANGO2 deficiency disease-associated defects in Drosophila and human cells. Journal of Inherited Metabolic Disease, 46(2), 358–368. doi:10.1002/jimd.12579
Lu, H., Li, W., Whiteway, M., Wang, H., Zhu, S., Ji, Z., … Jiang, Y. (2023). A small molecule inhibitor of Erg251 makes Fluconazole fungicidal by inhibiting the synthesis of the 14α-methylsterols. MBio, 14(1), e0263922. doi:10.1128/mbio.02639-22
Iwabuchi, S. J., Drabek, M. M., Cottam, W. J., Tadjibaev, A., Mohammadi-Nejad, A.-R., Sotiropoulos, S., … Auer, D. P. (2023). Medio-dorsal thalamic dysconnectivity in chronic knee pain: A possible mechanism for negative affect and pain comorbidity. The European Journal of Neuroscience, 57(2), 373–387. doi:10.1111/ejn.15880
Ouadhi, S., López, D. M. V., Mohideen, F. I., & Kwan, D. H. (2023). Engineering the enzyme toolbox to tailor glycosylation in small molecule natural products and protein biologics. Protein Engineering, Design & Selection: PEDS, 36. doi:10.1093/protein/gzac010
Orabi, M. A. A., Orabi, E. A., Abdel-Sattar, E.-S., English, A. M., Hatano, T., & Elimam, H. (2023). Structural determination and anticholinesterase assay of C-glycosidic ellagitannins from Lawsonia inermis leaves: A study supported by DFT calculations and molecular docking. Fitoterapia, 164(105360), 105360. doi:10.1016/j.fitote.2022.105360
Park, G. W., Shin, S., Kim, S. J., Lee, J.-S., Moon, M., & Min, K. (2023). Rice straw-derived lipid production by HMF/furfural-tolerant oleaginous yeast generated by adaptive laboratory evolution. Bioresource Technology, 367(128220), 128220. doi:10.1016/j.biortech.2022.128220
Capo, E., Peterson, B. D., Kim, M., Jones, D. S., Acinas, S. G., Amyot, M., … Gionfriddo, C. M. (2023). A consensus protocol for the recovery of mercury methylation genes from metagenomes. Molecular Ecology Resources, 23(1), 190–204. doi:10.1111/1755-0998.13687

2022

Galambo, D., & Bergdahl, A. (2023). Physiological levels of cardiolipin acutely affect mitochondrial respiration in vascular smooth muscle cells. Current Research in Physiology, 6(100097), 100097. doi:10.1016/j.crphys.2022.100097
Gwinnutt, J. M., Norton, S., Hyrich, K. L., Lunt, M., Combe, B., Rincheval, N., … Verstappen, S. M. M. (2022). Influence of social support, financial status, and lifestyle on the disparity between inflammation and disability in rheumatoid arthritis. Arthritis Care & Research. doi:10.1002/acr.24996
Grevesse, T., Guéguen, C., Onana, V. E., & Walsh, D. A. (2022). Degradation pathways for organic matter of terrestrial origin are widespread and expressed in Arctic Ocean microbiomes. Microbiome, 10(1), 237. doi:10.1186/s40168-022-01417-6
Kékedy-Nagy, L., Perry, J. M., Little, S. R., Llorens, O. Y., & Shih, S. C. C. (2023). An electrochemical aptasensor for Δ9-tetrahydrocannabinol detection in saliva on a microfluidic platform. Biosensors & Bioelectronics, 222(114998), 114998. doi:10.1016/j.bios.2022.114998
Li, J., Chroumpi, T., Garrigues, S., Kun, R. S., Meng, J., Salazar-Cerezo, S., … de Vries, R. P. (2022). The sugar metabolic model of Aspergillus niger can only be reliably transferred to fungi of its phylum. Journal of Fungi (Basel, Switzerland), 8(12), 1315. doi:10.3390/jof8121315
Ali, D. A., Domínguez Mercado, L., Findlay, B. L., Badia, A., & DeWolf, C. (2023). Opposites attract: Electrostatically driven loading of antimicrobial peptides into phytoglycogen nanocarriers. Langmuir: The ACS Journal of Surfaces and Colloids, 39(1), 53–63. doi:10.1021/acs.langmuir.2c01794
Asadi, P., Milev, M. P., Saint-Dic, D., Gamberi, C., & Sacher, M. (2023). Vitamin B5, a coenzyme A precursor, rescues TANGO2 deficiency disease-associated defects in Drosophila and human cells. Journal of Inherited Metabolic Disease, 46(2), 358–368. doi:10.1002/jimd.12579
Zhao, H., Karppi, J., Nguyen, T. T. M., Bellemare, A., Tsang, A., Master, E., & Tenkanen, M. (2022). Characterization of a novel AA3_1 xylooligosaccharide dehydrogenase from Thermothelomyces myriococcoides CBS 398.93. Biotechnology for Biofuels and Bioproducts, 15(1), 135. doi:10.1186/s13068-022-02231-w
Lu, H., Li, W., Whiteway, M., Wang, H., Zhu, S., Ji, Z., … Jiang, Y. (2023). A small molecule inhibitor of Erg251 makes Fluconazole fungicidal by inhibiting the synthesis of the 14α-methylsterols. MBio, 14(1), e0263922. doi:10.1128/mbio.02639-22
Miyake, C. Y., Lay, E. J., Soler-Alfonso, C., Glinton, K. E., Houck, K. M., Tosur, M., … Lalani, S. R. (2022). Natural history of TANGO2 deficiency disorder: Baseline assessment of 73 patients. Genetics in Medicine: Official Journal of the American College of Medical Genetics, 25(4), 100352. doi:10.1016/j.gim.2022.11.020
Iwabuchi, S. J., Drabek, M. M., Cottam, W. J., Tadjibaev, A., Mohammadi-Nejad, A.-R., Sotiropoulos, S., … Auer, D. P. (2023). Medio-dorsal thalamic dysconnectivity in chronic knee pain: A possible mechanism for negative affect and pain comorbidity. The European Journal of Neuroscience, 57(2), 373–387. doi:10.1111/ejn.15880
Samlali, K., Alves, C. L., Jezernik, M., & Shih, S. C. C. (2022). Droplet digital microfluidic system for screening filamentous fungi based on enzymatic activity. Microsystems & Nanoengineering, 8(1), 123. doi:10.1038/s41378-022-00456-1
Orabi, M. A. A., Orabi, E. A., Abdel-Sattar, E.-S., English, A. M., Hatano, T., & Elimam, H. (2023). Structural determination and anticholinesterase assay of C-glycosidic ellagitannins from Lawsonia inermis leaves: A study supported by DFT calculations and molecular docking. Fitoterapia, 164(105360), 105360. doi:10.1016/j.fitote.2022.105360
Ozugergin, I., & Piekny, A. (2022). Diversity is the spice of life: An overview of how cytokinesis regulation varies with cell type. Frontiers in Cell and Developmental Biology, 10, 1007614. doi:10.3389/fcell.2022.1007614
Husser, M. C., Ozugergin, I., Resta, T., Martin, V. J. J., & Piekny, A. J. (2022). Cytokinetic diversity in mammalian cells is revealed by the characterization of endogenous anillin, Ect2 and RhoA. Open Biology, 12(11), 220247. doi:10.1098/rsob.220247
Ahmadi, F., Simchi, M., Perry, J. M., Frenette, S., Benali, H., Soucy, J.-P., … Shih, S. C. C. (2022). Integrating machine learning and digital microfluidics for screening experimental conditions. Lab on a Chip, 23(1), 81–91. doi:10.1039/d2lc00764a
Shahina, Z., Al Homsi, R., Price, J. D. W., Whiteway, M., Sultana, T., & Dahms, T. E. S. (2022). Rosemary essential oil and its components 1,8-cineole and α-pinene induce ROS-dependent lethality and ROS-independent virulence inhibition in Candida albicans. PloS One, 17(11), e0277097. doi:10.1371/journal.pone.0277097
Dhaliwal, J. S., Panozzo, C., Benard, L., & Zerges, W. (2022). An RNA granule for translation quality control in Saccharomyces cerevisiae. Journal of Cell Science, 135(23). doi:10.1242/jcs.260388
Selim, A. S., Perry, J. M., Nasr, M. A., Pimprikar, J. M., & Shih, S. C. C. (2022). A synthetic biosensor for detecting putrescine in beef samples. ACS Applied Bio Materials, 5(11), 5487–5496. doi:10.1021/acsabm.2c00824
Kraemer, S. A., Barbosa da Costa, N., Oliva, A., Huot, Y., & Walsh, D. A. (2022). A resistome survey across hundreds of freshwater bacterial communities reveals the impacts of veterinary and human antibiotics use. Frontiers in Microbiology, 13, 995418. doi:10.3389/fmicb.2022.995418
Brunetti, S. C., Arseneault, M. K. M., & Gulick, P. J. (2022). The caleosin CLO7 and its role in the heterotrimeric G-protein signalling network. Journal of Plant Physiology, 279(153841), 153841. doi:10.1016/j.jplph.2022.153841
Park, G. W., Shin, S., Kim, S. J., Lee, J.-S., Moon, M., & Min, K. (2023). Rice straw-derived lipid production by HMF/furfural-tolerant oleaginous yeast generated by adaptive laboratory evolution. Bioresource Technology, 367(128220), 128220. doi:10.1016/j.biortech.2022.128220
Allard, P., Papazotos, F., & Potvin-Trottier, L. (2022). Microfluidics for long-term single-cell time-lapse microscopy: Advances and applications. Frontiers in Bioengineering and Biotechnology, 10, 968342. doi:10.3389/fbioe.2022.968342
Lee, J. S., Kim, S. H., Lee, J. Y., Ye, J. B., Sul, Y. H., Seok, J., … Kim, Y. (2022). Intestinal obstruction caused by small bowel entrapment within a lumbar fracture: A case report. Medicine, 101(42), e31273. doi:10.1097/MD.0000000000031273
Olajide, O. J., La Rue, C., Bergdahl, A., & Chapman, C. A. (2022). Inhibiting amyloid beta (1-42) peptide-induced mitochondrial dysfunction prevents the degradation of synaptic proteins in the entorhinal cortex. Frontiers in Aging Neuroscience, 14, 960314. doi:10.3389/fnagi.2022.960314
Ogliari, G., Ryg, J., Andersen-Ranberg, K., Scheel-Hincke, L. L., Collins, J. T., Cowley, A., … Masud, T. (2022). Association of pain and risk of falls in community-dwelling adults: a prospective study in the Survey of Health, Ageing and Retirement in Europe (SHARE). European Geriatric Medicine, 13(6), 1441–1454. doi:10.1007/s41999-022-00699-1
Hansen, J. Y., Markello, R. D., Tuominen, L., Nørgaard, M., Kuzmin, E., Palomero-Gallagher, N., … Misic, B. (2022). Correspondence between gene expression and neurotransmitter receptor and transporter density in the human brain. NeuroImage, 264(119671), 119671. doi:10.1016/j.neuroimage.2022.119671
Kim, Y., Lee, J. Y., Lee, J. S., Ye, J.-B., Kim, S. H., Sul, Y. H., … Choi, H. (2022). Endovascular treatment of traumatic renal artery pseudoaneurysm with a Stanford type A intramural haematoma: A case report. World Journal of Clinical Cases, 10(27), 9760–9767. doi:10.12998/wjcc.v10.i27.9760
Lee, S., Rim Lee, Y., Lee, W.-H., Youn Lee, S., Moon, M., Woo Park, G., … Lee, J.-S. (2022). Valorization of CO2 to β-farnesene in Rhodobacter sphaeroides. Bioresource Technology, 363(127955), 127955. doi:10.1016/j.biortech.2022.127955
Gowler, P. R. W., Turnbull, J., Shahtaheri, M., Walsh, D. A., Barrett, D. A., & Chapman, V. (2022). Interplay between cellular changes in the knee joint, circulating lipids and pain behaviours in a slowly progressing murine model of osteoarthritis. European Journal of Pain (London, England), 26(10), 2213–2226. doi:10.1002/ejp.2036
Chang, Y., Wang, Y., Mondo, S., Ahrendt, S., Andreopoulos, W., Barry, K., … Spatafora, J. W. (2022). Evolution of zygomycete secretomes and the origins of terrestrial fungal ecologies. IScience, 25(8), 104840. doi:10.1016/j.isci.2022.104840
Fekete, E., Bíró, V., Márton, A., Bakondi-Kovács, I., Németh, Z., Sándor, E., … Karaffa, L. (2022). Bioreactor as the root cause of the ‘manganese effect’ during Aspergillus niger citric acid fermentations. Frontiers in Bioengineering and Biotechnology, 10, 935902. doi:10.3389/fbioe.2022.935902
Kozlov, G., Mattijssen, S., Jiang, J., Nyandwi, S., Sprules, T., Iben, J. R., … Gehring, K. (2022). Structural basis of 3’-end poly(A) RNA recognition by LARP1. Nucleic Acids Research, 50(16), 9534–9547. doi:10.1093/nar/gkac696
Bettauer, V., Costa, A. C. B. P., Omran, R. P., Massahi, S., Kirbizakis, E., Simpson, S., … Hallett, M. T. (2022). A deep learning approach to capture the essence of Candida albicans morphologies. Microbiology Spectrum, 10(5), e0147222. doi:10.1128/spectrum.01472-22
Ouellette, S., Pakarian, P., Bin, X., & Pawelek, P. D. (2022). Evidence of an intracellular interaction between the Escherichia coli enzymes EntC and EntB and identification of a potential electrostatic channeling surface. Biochimie, 202, 159–165. doi:10.1016/j.biochi.2022.07.018
Liang, J., Gamarra, J. G. P., Picard, N., Zhou, M., Pijanowski, B., Jacobs, D. F., … Hui, C. (2022). Co-limitation towards lower latitudes shapes global forest diversity gradients. Nature Ecology & Evolution, 6(10), 1423–1437. doi:10.1038/s41559-022-01831-x
Leonov, A., Feldman, R., Piano, A., Arlia-Ciommo, A., Junio, J. A. B., Orfanos, E., … Titorenko, V. I. (2022). Diverse geroprotectors differently affect a mechanism linking cellular aging to cellular quiescence in budding yeast. Oncotarget, 13(1), 918–943. doi:10.18632/oncotarget.28256
Shantha, J., Reddy, A. K., Sura, A., Tsang, A., Moussa, K., Acharya, N., … Doan, T. (2022). Bilateral anterior and intermediate uveitis in SARS-CoV-2 associated multisystem inflammatory syndrome in a pediatric patient. Pediatric Rheumatology Online Journal, 20(1), 59. doi:10.1186/s12969-022-00712-8
Li, L., Lu, H., Zhang, X., Whiteway, M., Wu, H., Tan, S., … Jiang, Y. (2022). Baicalein acts against Candida albicans by targeting Eno1 and inhibiting glycolysis. Microbiology Spectrum, 10(4), e0208522. doi:10.1128/spectrum.02085-22
Marinovíc, M., Di Falco, M., Aguilar Pontes, M. V., Gorzsás, A., Tsang, A., de Vries, R. P., … Hildén, K. (2022). Comparative analysis of enzyme production patterns of lignocellulose degradation of two white rot fungi: Obba rivulosa and Gelatoporia subvermispora. Biomolecules, 12(8), 1017. doi:10.3390/biom12081017
Feng, Y., Zhang, Y., Li, J., Omran, R. P., Whiteway, M., & Feng, J. (2022). Transcriptional profiling of the Candida albicans response to the DNA damage agent methyl methanesulfonate. International Journal of Molecular Sciences, 23(14), 7555. doi:10.3390/ijms23147555
Pontarelli, A., Liu, J. T., Movasat, H., Ménard, S., Oh, J. K., & Wilds, C. J. (2022). Synthesis of a convertible linker containing a disulfide group for oligonucleotide functionalization. Organic Letters, 24(30), 5579–5583. doi:10.1021/acs.orglett.2c02149
Ye, J. B., Lee, J. Y., Lee, J. S., Kim, S. H., Choi, H., Kim, Y., … Choi, J. H. (2022). Observational management of Grade II or higher blunt traumatic thoracic aortic injury: 15 years of experience at a single suburban institution. International Journal of Critical Illness and Injury Science, 12(2), 101–105. doi:10.4103/ijciis.ijciis_89_21
Sohrabi Kashani, A., Larocque, K., Piekny, A., & Packirisamy, M. (2022). Gold nano-bio-interaction to modulate mechanobiological responses for cancer therapy applications. ACS Applied Bio Materials, 5(8), 3741–3752. doi:10.1021/acsabm.2c00230
Capo, E., Peterson, B. D., Kim, M., Jones, D. S., Acinas, S. G., Amyot, M., … Gionfriddo, C. M. (2023). A consensus protocol for the recovery of mercury methylation genes from metagenomes. Molecular Ecology Resources, 23(1), 190–204. doi:10.1111/1755-0998.13687
Choi, M. J., Choi, K. C., Lee, D. H., Jeong, H. Y., Kang, S. J., Kim, M. W., … Park, Y. S. (2022). EGF receptor-targeting cancer therapy using CD47-engineered cell-derived nanoplatforms. Nanotechnology, Science and Applications, 15, 17–31. doi:10.2147/NSA.S352038
Swain, S., Fernandes, G. S., Sarmanova, A., Valdes, A. M., Walsh, D. A., Coupland, C., … Zhang, W. (2022). Comorbidities and use of analgesics in people with knee pain: a study in the Nottingham Knee Pain and Health in the Community (KPIC) cohort. Rheumatology Advances in Practice, 6(2), rkac049. doi:10.1093/rap/rkac049
Coelho, P. P., Hesketh, G. G., Pedersen, A., Kuzmin, E., Fortier, A.-M. N., Bell, E. S., … Park, M. (2022). Endosomal LC3C-pathway selectively targets plasma membrane cargo for autophagic degradation. Nature Communications, 13(1), 3812. doi:10.1038/s41467-022-31465-3
Almeida, H., Tsang, A., & Diallo, A. B. (2022). Improving candidate Biosynthetic Gene Clusters in fungi through reinforcement learning. Bioinformatics (Oxford, England), 38(16), 3984–3991. doi:10.1093/bioinformatics/btac420
Schoettner, K., Alonso, M., Button, M., Goldfarb, C., Herrera, J., Quteishat, N., … Amir, S. (2022). Characterization of affective behaviors and motor functions in mice with a striatal-specific deletion of Bmal1 and Per2. Frontiers in Physiology, 13, 922080. doi:10.3389/fphys.2022.922080

2021

Lillywhite, A., Woodhams, S. G., Gonçalves, S. V., Watson, D. J. G., Li, L., Burston, J. J., … Chapman, V. (2021). Anxiety enhances pain in a model of osteoarthritis and is associated with altered endogenous opioid function and reduced opioid analgesia. Pain Reports (Baltimore, Md.), 6(4), e956. doi:10.1097/PR9.0000000000000956
Liczner, C., Hanna, C. C., Payne, R. J., & Wilds, C. J. (2022). Generation of oligonucleotide conjugates via one-pot diselenide-selenoester ligation-deselenization/alkylation. Chemical Science (Royal Society of Chemistry: 2010), 13(2), 410–420. doi:10.1039/d1sc04937b
Park, G. W., Moon, M., Park, J.-H., Jo, J.-H., Kim, H. J., Lee, J. Y., … Lee, J.-S. (2022). Improving hydrogen production by pH adjustment in pressurized gas fermentation. Bioresource Technology, 346(126605), 126605. doi:10.1016/j.biortech.2021.126605
Jaunky, D. B., Larocque, K., Husser, M. C., Liu, J. T., Forgione, P., & Piekny, A. (2021). Characterization of a recently synthesized microtubule-targeting compound that disrupts mitotic spindle poles in human cells. Scientific Reports, 11(1), 23665. doi:10.1038/s41598-021-03076-3
Lee, J. Y., Sul, Y. H., Kim, S. H., Ye, J. B., Lee, J. S., Choi, H., … Choi, J. H. (2021). Risk factors for ventilator-associated pneumonia in trauma patients with torso injury: a retrospective single-center study. The Journal of International Medical Research, 49(12), 3000605211061029. doi:10.1177/03000605211061029
Kapadia, J. B., Kharma, N., Davis, A. N., Kamel, N., & Perreault, J. (2022). Toehold-mediated strand displacement to measure released product from self-cleaving ribozymes. RNA (New York, N.Y.), 28(2), 263–273. doi:10.1261/rna.078823.121
Mohammad, K., Orfanos, E., & Titorenko, V. I. (2021). Caloric restriction causes a distinct reorganization of the lipidome in quiescent and non-quiescent cells of budding yeast. Oncotarget, 12(24), 2351–2374. doi:10.18632/oncotarget.28133
Garge, R. K., Cha, H. J., Lee, C., Gollihar, J. D., Kachroo, A. H., Wallingford, J. B., & Marcotte, E. M. (2021). Discovery of new vascular disrupting agents based on evolutionarily conserved drug action, pesticide resistance mutations, and humanized yeast. Genetics, 219(1). doi:10.1093/genetics/iyab101
Yao, S., Feng, Y., Islam, A., Shrivastava, M., Gu, H., Lu, Y., … Feng, J. (2021). Corrigendum to ‘Loss of Arp1, a putative actin-related protein, triggers filamentous and invasive growth and impairs pathogenicity in Candida albicans’ (Computational and Structural Biotechnology Journal, 2020, 18: 4002-4015). Computational and Structural Biotechnology Journal, 19, 5943–5945. doi:10.1016/j.csbj.2021.11.001
Park, W.-K., Min, K., Yun, J.-H., Kim, M., Kim, M.-S., Park, G. W., … Lee, J.-S. (2022). Paradigm shift in algal biomass refinery and its challenges. Bioresource Technology, 346(126358), 126358. doi:10.1016/j.biortech.2021.126358
Tsang, A., Kanda, P., Gottlieb, C., Virgili, G., Kantungane, L., & Coupland, S. (2022). A novel 5-ring multifocal electroretinography stimulus for detecting hydroxychloroquine retinal toxicity. Documenta Ophthalmologica. Advances in Ophthalmology, 144(2), 117–124. doi:10.1007/s10633-021-09858-4
Mohideen, F. I., Nguyen, L. H., Richard, J. D., Ouadhi, S., & Kwan, D. H. (2022). In vitro reconstitution of the dTDP-l-daunosamine biosynthetic pathway provides insights into anthracycline glycosylation. ACS Chemical Biology, 17(12), 3331–3340. doi:10.1021/acschembio.1c00646
Davies, M. E., Tsyplenkov, D., & Martin, V. J. J. (2021). Engineering yeast for DE Novo synthesis of the insect repellent nepetalactone. ACS Synthetic Biology, 10(11), 2896–2903. doi:10.1021/acssynbio.1c00420
Walsh, D. A. (2021). Nociplastic pain: helping to explain disconnect between pain and pathology. Pain, 162(11), 2627–2628. doi:10.1097/j.pain.0000000000002323
Munot, P., McCrea, N., Torelli, S., Manzur, A., Sewry, C., Chambers, D., … Muntoni, F. (2022). TRAPPC11-related muscular dystrophy with hypoglycosylation of alpha-dystroglycan in skeletal muscle and brain. Neuropathology and Applied Neurobiology, 48(2), e12771. doi:10.1111/nan.12771
Haybatollahi, S. M., James, R. J. E., Fernandes, G., Valdes, A., Doherty, M., Zhang, W., … Ferguson, E. (2022). Identifying multiple knee pain trajectories and the prediction of opioid and NSAID medication used: A latent class growth approach. Pain Practice: The Official Journal of World Institute of Pain, 22(2), 210–221. doi:10.1111/papr.13082
Brunetti, S. C., Arseneault, M. K. M., Wright, J. A., Wang, Z., Ehdaeivand, M.-R., Lowden, M. J., … Gulick, P. J. (2021). The stress induced caleosin, RD20/CLO3, acts as a negative regulator of GPA1 in Arabidopsis. Plant Molecular Biology, 107(3), 159–175. doi:10.1007/s11103-021-01189-x
Kuzmin, E., Monlong, J., Martinez, C., Kuasne, H., Kleinman, C. L., Ragoussis, J., … Park, M. (2021). Inferring copy number from triple-negative breast cancer patient derived xenograft scRNAseq data using scCNA. Methods in Molecular Biology (Clifton, N.J.), 2381, 285–303. doi:10.1007/978-1-0716-1740-3_16
Wang, L., Zhu, T., Rodriguez, J. C., Deal, K. R., Dubcovsky, J., McGuire, P. E., … Dvorak, J. (2021). Aegilops tauschii genome assembly Aet v5.0 features greater sequence contiguity and improved annotation. G3 (Bethesda, Md.), 11(12). doi:10.1093/g3journal/jkab325
Davis, A. N., Samlali, K., Kapadia, J. B., Perreault, J., Shih, S. C. C., & Kharma, N. (2021). Digital microfluidics chips for the execution and real-time monitoring of multiple ribozymatic cleavage reactions. ACS Omega, 6(35), 22514–22524. doi:10.1021/acsomega.1c00239
Kakon, G., Mohamadi, A.-A. K., Levtova, N., Maurice-Ventouris, M. E. I., Benoit, E.-A., Chouchou, F., … Dover, G. (2021). Elevated heart rate and pain during a cold pressor test correlates to pain catastrophizing. Applied Psychophysiology and Biofeedback, 46(4), 359–366. doi:10.1007/s10484-021-09520-4
Davydov, D. R., Jung, C., Petsko, G. A., Sligar, S. G., & Kornblatt, J. A. (2021). A pathfinder in high-pressure bioscience: In memoriam of Gaston Hui Bon Hoa. Biology, 10(8), 778. doi:10.3390/biology10080778
Garrigues, S., Kun, R. S., Peng, M., Gruben, B. S., Benoit Gelber, I., Mäkelä, M., & de Vries, R. P. (2021). The cultivation method affects the transcriptomic response of Aspergillus niger to growth on sugar beet pulp. Microbiology Spectrum, 9(1), e0106421. doi:10.1128/Spectrum.01064-21
Min, K., Kim, H., Park, H. J., Lee, S., Jung, Y. J., Yoon, J. H., … Joo, J. C. (2021). Improving the catalytic performance of xylanase from Bacillus circulans through structure-based rational design. Bioresource Technology, 340(125737), 125737. doi:10.1016/j.biortech.2021.125737
Liu, J. T., Jaunky, D. B., Larocque, K., Chen, F., Mckibbon, K., Sirouspour, M., … Forgione, P. (2021). Design, structure-activity relationship study and biological evaluation of the thieno[3,2-c]isoquinoline scaffold as a potential anti-cancer agent. Bioorganic & Medicinal Chemistry Letters, 52(128327), 128327. doi:10.1016/j.bmcl.2021.128327
Koh, S. P., Pham, N. P., & Piekny, A. (2022). Seeing is believing: tools to study the role of Rho GTPases during cytokinesis. Small GTPases, 13(1), 211–224. doi:10.1080/21541248.2021.1957384
Sul, Y. H., Lee, J. Y., Kim, S. H., Ye, J. B., Lee, J. S., Yoon, S. Y., & Choi, J. H. (2021). Risk factors for acute kidney injury in critically ill patients with torso injury: A retrospective observational single-center study. Medicine, 100(29), e26723. doi:10.1097/MD.0000000000026723
Kim, S., Jung, P. Y., Lee, J. S., Hwang, S., Sohn, J. H., Yoon, Y., … Eom, Y. W. (2021). Cultured human skeletal muscle satellite cells exhibit characteristics of mesenchymal stem cells and play anti-inflammatory roles through prostaglandin E2 and hepatocyte growth factors. Cell Biology International, 45(12), 2443–2451. doi:10.1002/cbin.11688
Perry, J. M., Soffer, G., Jain, R., & Shih, S. C. C. (2021). Expanding the limits towards ‘one-pot’ DNA assembly and transformation on a rapid-prototype microfluidic device. Lab on a Chip, 21(19), 3730–3741. doi:10.1039/d1lc00415h
Jangra, R., Brunetti, S. C., Wang, X., Kaushik, P., Gulick, P. J., Foroud, N. A., … Lee, J. S. (2021). Duplicated antagonistic EPF peptides optimize grass stomatal initiation. Development (Cambridge, England), 148(16). doi:10.1242/dev.199780
Nomikos, P. A., Hall, M., Fuller, A., Millar, B., Ogollah, R., Valdes, A., … Abhishek, A. (2021). Fidelity assessment of nurse-led non-pharmacological package of care for knee pain in the package development phase of a feasibility randomised controlled trial based in secondary care: a mixed methods study. BMJ Open, 11(7), e045242. doi:10.1136/bmjopen-2020-045242
Moon, M., Yeon, Y. J., Park, H. J., Park, J., Park, G. W., Kim, G.-H., … Min, K. (2021). Chemoenzymatic valorization of agricultural wastes into 4-hydroxyvaleric acid via levulinic acid. Bioresource Technology, 337(125479), 125479. doi:10.1016/j.biortech.2021.125479
Lee, J., Park, H. J., Moon, M., Lee, J.-S., & Min, K. (2021). Recent progress and challenges in microbial polyhydroxybutyrate (PHB) production from CO2 as a sustainable feedstock: A state-of-the-art review. Bioresource Technology, 339(125616), 125616. doi:10.1016/j.biortech.2021.125616
Kuzmin, E., Taylor, J. S., & Boone, C. (2022). Retention of duplicated genes in evolution. Trends in Genetics: TIG, 38(1), 59–72. doi:10.1016/j.tig.2021.06.016
Agrawal, D., Tsang, A., & Chadha, B. S. (2021). Economizing the lignocellulosic hydrolysis process using heterologously expressed auxiliary enzymes feruloyl esterase D (CE1) and β-xylosidase (GH43) derived from thermophilic fungi Scytalidium thermophilum. Bioresource Technology, 339(125603), 125603. doi:10.1016/j.biortech.2021.125603
Jeong, D.-M., Oh, S. H., Choo, H., Choi, Y.-S., Kim, S.-H., Lee, J.-S., & Hwang, E.-H. (2021). Root proximity of the anchoring miniscrews of orthodontic miniplates in the mandibular incisal area: Cone-beam computed tomographic analysis. Korean Journal of Orthodontics, 51(4), 231–240. doi:10.4041/kjod.2021.51.4.231
Kun, R. S., Garrigues, S., Di Falco, M., Tsang, A., & de Vries, R. P. (2021b). The chimeric GaaR-XlnR transcription factor induces pectinolytic activities in the presence of D-xylose in Aspergillus niger. Applied Microbiology and Biotechnology, 105(13), 5553–5564. doi:10.1007/s00253-021-11428-2
McWilliams, D. F., Thankaraj, D., Jones-Diette, J., Morgan, R., Ifesemen, O. S., Shenker, N. G., & Walsh, D. A. (2021). The efficacy of systemic glucocorticosteroids for pain in rheumatoid arthritis: a systematic literature review and meta-analysis. Rheumatology (Oxford, England), 61(1), 76–89. doi:10.1093/rheumatology/keab503
Morel, E., Cui, L., Zerges, W., & Wilkinson, K. J. (2021). Mixtures of rare earth elements show antagonistic interactions in Chlamydomonas reinhardtii. Environmental Pollution (Barking, Essex: 1987), 287(117594), 117594. doi:10.1016/j.envpol.2021.117594
Ifesemen, O. S., McWilliams, D. F., Ferguson, E., Wakefield, R., Akin-Akinyosoye, K., Wilson, D., … Walsh, D. A. (2021). Central Aspects of Pain in Rheumatoid Arthritis (CAP-RA): protocol for a prospective observational study. BMC Rheumatology, 5(1), 23. doi:10.1186/s41927-021-00187-2
O’Malley, M. A., & Walsh, D. A. (2021). Rethinking microbial infallibility in the metagenomics era. FEMS Microbiology Ecology, 97(8). doi:10.1093/femsec/fiab092
Ramachandran, A., McLatchie, S., & Walsh, D. A. (2021). A novel freshwater to marine evolutionary transition revealed within Methylophilaceae bacteria from the Arctic Ocean. MBio, 12(3), e0130621. doi:10.1128/mBio.01306-21
Min, K., Kim, H. T., Park, S. J., Lee, S., Jung, Y. J., Lee, J.-S., … Joo, J. C. (2021). Improving the organic solvent resistance of lipase a from Bacillus subtilis in water-ethanol solvent through rational surface engineering. Bioresource Technology, 337(125394), 125394. doi:10.1016/j.biortech.2021.125394
Kun, R. S., Garrigues, S., Di Falco, M., Tsang, A., & de Vries, R. P. (2021a). Blocking utilization of major plant biomass polysaccharides leads Aspergillus niger towards utilization of minor components. Microbial Biotechnology, 14(4), 1683–1698. doi:10.1111/1751-7915.13835
Kieft, K., Zhou, Z., Anderson, R. E., Buchan, A., Campbell, B. J., Hallam, S. J., … Anantharaman, K. (2021). Ecology of inorganic sulfur auxiliary metabolism in widespread bacteriophages. Nature Communications, 12(1), 3503. doi:10.1038/s41467-021-23698-5
Evdokias, G., Semper, C., Mora-Ochomogo, M., Di Falco, M., Nguyen, T. T. M., Savchenko, A., … Benoit-Gelber, I. (2021). Identification of a novel biosynthetic gene cluster in Aspergillus niger using comparative genomics. Journal of Fungi (Basel, Switzerland), 7(5), 374. doi:10.3390/jof7050374
Lentini, M., Scalia, J., Lebel, F. B., Touma, F., Jhajj, A., Darlington, P. J., & Dover, G. (2021). Association between pain catastrophizing and pain and cardiovascular changes during a cold-pressor test in athletes. Journal of Athletic Training, 56(5), 473–483. doi:10.4085/1062-6050-016-20
Liczner, C., Duke, K., Juneau, G., Egli, M., & Wilds, C. J. (2021). Beyond ribose and phosphate: Selected nucleic acid modifications for structure-function investigations and therapeutic applications. Beilstein Journal of Organic Chemistry, 17, 908–931. doi:10.3762/bjoc.17.76
Choi, M. J., Choi, J. H., Park, Y. S., Park, K.-S., & Lee, J. S. (2021). Identification of genes involved in neuronal cell death and recovery over time in rat axotomy and neurorrhaphy models through RNA sequencing. Molecular and Cellular Neurosciences, 113(103628), 103628. doi:10.1016/j.mcn.2021.103628
Demirci, E., Arentshorst, M., Yilmaz, B., Swinkels, A., Reid, I. D., Visser, J., … Ram, A. F. J. (2021). Genetic characterization of mutations related to conidiophore stalk length development in Aspergillus niger laboratory strain N402. Frontiers in Genetics, 12, 666684. doi:10.3389/fgene.2021.666684

2020

Huang, H. Y., Skripka, A., Zaroubi, L., Findlay, B. L., Vetrone, F., Skinner, C., … Cuccia, L. A. (2020). Electrospun upconverting nanofibrous hybrids with smart NIR-light-controlled drug release for wound dressing. ACS Applied Bio Materials, 3(10), 7219–7227. doi:10.1021/acsabm.0c01019
Almeida, H., Palys, S., Tsang, A., & Diallo, A. B. (2020). TOUCAN: a framework for fungal biosynthetic gene cluster discovery. NAR Genomics and Bioinformatics, 2(4), lqaa098. doi:10.1093/nargab/lqaa098
Yao, S., Feng, Y., Islam, A., Shrivastava, M., Gu, H., Lu, Y., … Feng, J. (2020). Loss of Arp1, a putative actin-related protein, triggers filamentous and invasive growth and impairs pathogenicity in Candida albicans. Computational and Structural Biotechnology Journal, 18, 4002–4015. doi:10.1016/j.csbj.2020.11.034
Orabi, E. A., & English, A. M. (2021). Modeling shows that rotation about the peroxide O-O bond assists protein and lipid functional groups in discriminating between H2O2 and H2O. The Journal of Physical Chemistry. B, 125(1), 137–147. doi:10.1021/acs.jpcb.0c10326
van Leeuwe, T. M., Arentshorst, M., Forn-Cuní, G., Geoffrion, N., Tsang, A., Delvigne, F., … Punt, P. J. (2020). Deletion of the Aspergillus niger pro-protein processing protease gene kexB results in a pH-dependent morphological transition during submerged cultivations and increases cell wall chitin content. Microorganisms, 8(12), 1918. doi:10.3390/microorganisms8121918
Lee, S. Y., Oh, Y.-K., Lee, S., Fitriana, H. N., Moon, M., Kim, M.-S., … Lee, J.-S. (2021). Recent developments and key barriers to microbial CO2 electrobiorefinery. Bioresource Technology, 320(Pt A), 124350. doi:10.1016/j.biortech.2020.124350
Milev, M. P., Stanga, D., Schänzer, A., Nascimento, A., Saint-Dic, D., Ortez, C., … Jimenez-Mallebrera, C. (2020). Publisher Correction: Characterization of three TRAPPC11 variants suggests a critical role for the extreme carboxy terminus of the protein. Scientific Reports, 10(1), 19770. doi:10.1038/s41598-020-76436-0
Matylda, L., Joseph, S., Frédérike, B. L., Fadi, T., Aneet, J., Darlington, P. J., & Dover, G. (2020). Pain catastrophizing in athletes correlates with pain and cardiovascular changes during a painful cold pressor test. Journal of Athletic Training. doi:10.4085/16-20
Garner, R. E., Gregory-Eaves, I., & Walsh, D. A. (2020). Sediment metagenomes as time capsules of lake microbiomes. MSphere, 5(6). doi:10.1128/mSphere.00512-20
Martins, D., McKay, G. A., English, A. M., & Nguyen, D. (2020). Sublethal paraquat confers multidrug tolerance in Pseudomonas aeruginosa by inducing superoxide dismutase activity and lowering envelope permeability. Frontiers in Microbiology, 11, 576708. doi:10.3389/fmicb.2020.576708
Tariq, S., Tsang, A., Wang, M., Reaume, N., Carlson, H., Sajobi, T. T., … Barber, P. A. (2020). White matter tract microstructure and cognitive performance after transient ischemic attack. PloS One, 15(10), e0239116. doi:10.1371/journal.pone.0239116
Evans, A. M., O’Donovan, C., Playdon, M., Beecher, C., Beger, R. D., Bowden, J. A., … Metabolomics Quality Assurance, Quality Control Consortium (mQACC). (2020). Dissemination and analysis of the quality assurance (QA) and quality control (QC) practices of LC-MS based untargeted metabolomics practitioners. Metabolomics: Official Journal of the Metabolomic Society, 16(10), 113. doi:10.1007/s11306-020-01728-5
Gowler, P. R. W., Mapp, P. I., Burston, J. J., Shahtaheri, M., Walsh, D. A., & Chapman, V. (2020). Refining surgical models of osteoarthritis in mice and rats alters pain phenotype but not joint pathology. PloS One, 15(9), e0239663. doi:10.1371/journal.pone.0239663
Hall, M., Fuller, A., Nomikos, P. A., Millar, B., Ogollah, R., Valdes, A., … Abhishek, A. (2020). East Midlands knee pain multiple randomised controlled trial cohort study: cohort establishment and feasibility study protocol. BMJ Open, 10(9), e037760. doi:10.1136/bmjopen-2020-037760
Milev, M. P., Saint-Dic, D., Zardoui, K., Klopstock, T., Law, C., Distelmaier, F., & Sacher, M. (2021). The phenotype associated with variants in TANGO2 may be explained by a dual role of the protein in ER-to-Golgi transport and at the mitochondria. Journal of Inherited Metabolic Disease, 44(2), 426–437. doi:10.1002/jimd.12312
Dubey, A., Malla, M. A., Kumar, A., Dayanandan, S., & Khan, M. L. (2020). Plants endophytes: unveiling hidden agenda for bioprospecting toward sustainable agriculture. Critical Reviews in Biotechnology, 40(8), 1210–1231. doi:10.1080/07388551.2020.1808584
Shetty, C., Noronha, A., Pontarelli, A., Wilds, C. J., & Oh, J. K. (2020). Dual-location dual-acid/glutathione-degradable cationic micelleplexes through hydrophobic modification for enhanced gene silencing. Molecular Pharmaceutics, 17(10), 3979–3989. doi:10.1021/acs.molpharmaceut.0c00767
Al-Deri, N., Okur, V., Ahimaz, P., Milev, M., Valivullah, Z., Hagen, J., … Ganapathi, M. (2021). A novel homozygous variant in TRAPPC2L results in a neurodevelopmental disorder and disrupts TRAPP complex function. Journal of Medical Genetics, 58(9), 592–601. doi:10.1136/jmedgenet-2020-107016
Kothandaraman, S., Dar, J. A., Sundarapandian, S., Dayanandan, S., & Khan, M. L. (2020). Ecosystem-level carbon storage and its links to diversity, structural and environmental drivers in tropical forests of Western Ghats, India. Scientific Reports, 10(1), 13444. doi:10.1038/s41598-020-70313-6
van Leeuwe, T. M., Wattjes, J., Niehues, A., Forn-Cuní, G., Geoffrion, N., Mélida, H., … Ram, A. F. J. (2020). A seven-membered cell wall related transglycosylase gene family in Aspergillus niger is relevant for cell wall integrity in cell wall mutants with reduced α-glucan or galactomannan. Cell Surface (Amsterdam), 6(100039), 100039. doi:10.1016/j.tcsw.2020.100039
Lee, S. M., Chun, S., & Lee, J. S. (2020). The role of negative emotions pre- and post-implementation of graphic health warnings: Longitudinal evidence from South Korea. International Journal of Environmental Research and Public Health, 17(15), 5393. doi:10.3390/ijerph17155393
Horianopoulos, L. C., Gluck-Thaler, E., Benoit Gelber, I., Cowen, L. E., Geddes-McAlister, J., Landry, C. R., … Gerstein, A. C. (2021). The Canadian Fungal Research Network: current challenges and future opportunities. Canadian Journal of Microbiology, 67(1), 13–22. doi:10.1139/cjm-2020-0263
Palys, S., Pham, T. T. M., & Tsang, A. (2020). Biosynthesis of alkylcitric acids in Aspergillus niger involves both co-localized and unlinked genes. Frontiers in Microbiology, 11, 1378. doi:10.3389/fmicb.2020.01378
Mohammad, K., Baratang Junio, J. A., Tafakori, T., Orfanos, E., & Titorenko, V. I. (2020). Mechanisms that link chronological aging to cellular quiescence in budding yeast. International Journal of Molecular Sciences, 21(13), 4717. doi:10.3390/ijms21134717
Pyne, M. E., Kevvai, K., Grewal, P. S., Narcross, L., Choi, B., Bourgeois, L., … Martin, V. J. J. (2020). A yeast platform for high-level synthesis of tetrahydroisoquinoline alkaloids. Nature Communications, 11(1), 3337. doi:10.1038/s41467-020-17172-x
Kuzmin, E., VanderSluis, B., Nguyen Ba, A. N., Wang, W., Koch, E. N., Usaj, M., … Boone, C. (2020). Exploring whole-genome duplicate gene retention with complex genetic interaction analysis. Science (New York, N.Y.), 368(6498), eaaz5667. doi:10.1126/science.aaz5667
Dakik, P., Rodriguez, M. E. L., Junio, J. A. B., Mitrofanova, D., Medkour, Y., Tafakori, T., … Titorenko, V. I. (2020). Discovery of fifteen new geroprotective plant extracts and identification of cellular processes they affect to prolong the chronological lifespan of budding yeast. Oncotarget, 11(23), 2182–2203. doi:10.18632/oncotarget.27615
Copp, W., & Wilds, C. J. (2020). O6 -alkylguanine DNA alkyltransferase mediated disassembly of a DNA tetrahedron. Chemistry (Weinheim an Der Bergstrasse, Germany), 26(65), 14802–14806. doi:10.1002/chem.202002565
Al-Farsi, N., Tsang, A. C., Sharma, R. A., & Fournier, A. (2020). Ultrasound biomicroscopy and posterior B-scan findings in Walker-Warburg syndrome. Canadian Journal of Ophthalmology. Journal Canadien d’ophtalmologie, 55(6), e203–e205. doi:10.1016/j.jcjo.2020.04.022
Zhao, J., Si, Y., Han, Z., Li, J., Guo, W., Fu, Y., … Withers, S. G. (2020). Corrigendum: Facile formation of β-thioGlcNAc linkages to thiol-containing sugars, peptides, and proteins using a mutant GH20 hexosaminidase. Angewandte Chemie (International Ed. in English), 59(23), 8752. doi:10.1002/anie.202001582
Soroko, M., & Kwan, D. H. (2020). Enzymatic synthesis of a fluorogenic reporter substrate and the development of a high-throughput assay for fucosyltransferase VIII provide a toolkit to probe and inhibit core fucosylation. Biochemistry, 59(22), 2100–2110. doi:10.1021/acs.biochem.0c00286
Cui, T. T., Dawson, T. J., McLatchie, S., Dunn, K., Bielawski, J., & Walsh, D. A. (2020). Modelling free-living and particle-associated bacterial assemblages across the deep and hypoxic Lower St. Lawrence Estuary. MSphere, 5(3). doi:10.1128/mSphere.00364-20
Dilokpimol, A., Peng, M., Di Falco, M., Chin A Woeng, T., Hegi, R. M. W., Granchi, Z., … de Vries, R. P. (2020). Penicillium subrubescens adapts its enzyme production to the composition of plant biomass. Bioresource Technology, 311(123477), 123477. doi:10.1016/j.biortech.2020.123477
Zohner, C. M., Mo, L., Renner, S. S., Svenning, J.-C., Vitasse, Y., Benito, B. M., … Crowther, T. W. (2020). Late-spring frost risk between 1959 and 2017 decreased in North America but increased in Europe and Asia. Proceedings of the National Academy of Sciences of the United States of America, 117(22), 12192–12200. doi:10.1073/pnas.1920816117
Ribeiro, G. O., Gruninger, R. J., Jones, D. R., Beauchemin, K. A., Yang, W. Z., Wang, Y., … McAllister, T. A. (2020). Effect of ammonia fiber expansion-treated wheat straw and a recombinant fibrolytic enzyme on rumen microbiota and fermentation parameters, total tract digestibility, and performance of lambs. Journal of Animal Science, 98(5). doi:10.1093/jas/skaa116
Han, J., Butler, G., Moriwaki, H., Konno, H., Soloshonok, V. A., & Kitamura, T. (2020). Kitamura electrophilic fluorination using HF as a source of fluorine. Molecules (Basel, Switzerland), 25(9), 2116. doi:10.3390/molecules25092116
van Erven, G., Kleijn, A. F., Patyshakuliyeva, A., Di Falco, M., Tsang, A., de Vries, R. P., … Kabel, M. A. (2020). Evidence for ligninolytic activity of the ascomycete fungus Podospora anserina. Biotechnology for Biofuels, 13(1), 75. doi:10.1186/s13068-020-01713-z
Persson, M. S. M., Stocks, J., Varadi, G., Hashempur, M. H., van Middelkoop, M., Bierma-Zeinstra, S., … Zhang, W. (2020). Predicting response to topical non-steroidal anti-inflammatory drugs in osteoarthritis: an individual patient data meta-analysis of randomized controlled trials. Rheumatology (Oxford, England), 59(9), 2207–2216. doi:10.1093/rheumatology/keaa113
Bastos, R. W., Valero, C., Silva, L. P., Schoen, T., Drott, M., Brauer, V., … Goldman, G. H. (2020). Functional characterization of clinical isolates of the opportunistic fungal pathogen Aspergillus nidulans. MSphere, 5(2). doi:10.1128/mSphere.00153-20
Choi, S.-A., Jeong, Y., Lee, J., Huh, Y. H., Choi, S. H., Kim, H.-S., … Lee, H. U. (2020). Biocompatible liquid-type carbon nanodots (C-paints) as light delivery materials for cell growth and astaxanthin induction of Haematococcus pluvialis. Materials Science & Engineering. C, Materials for Biological Applications, 109(110500), 110500. doi:10.1016/j.msec.2019.110500
Byun, C. S., Hwang, S., Woo, S.-H., Kim, M. Y., Lee, J. S., Lee, J. I., … Eom, Y. W. (2020). Adipose tissue-derived mesenchymal stem cells suppress growth of Huh7 hepatocellular carcinoma cells via interferon (IFN)-β-mediated JAK/STAT1 pathway in vitro. International Journal of Medical Sciences, 17(5), 609–619. doi:10.7150/ijms.41354
Mohammad, K., Jiang, H., Hossain, M. I., & Titorenko, V. I. (2020). Quantitative analysis of the cellular lipidome of Saccharomyces cerevisiae using liquid chromatography coupled with tandem mass spectrometry. Journal of Visualized Experiments: JoVE, (157). doi:10.3791/60616
Millar, B., McWilliams, D. F., Abhishek, A., Akin-Akinyosoye, K., Auer, D. P., Chapman, V., … Walsh, D. A. (2020). Investigating musculoskeletal health and wellbeing; a cohort study protocol. BMC Musculoskeletal Disorders, 21(1), 182. doi:10.1186/s12891-020-03195-4
Min, K., Park, Y.-S., Park, G. W., Lee, J.-P., Moon, M., Ko, C. H., & Lee, J.-S. (2020). Elevated conversion of CO2 to versatile formate by a newly discovered formate dehydrogenase from Rhodobacter aestuarii. Bioresource Technology, 305(123155), 123155. doi:10.1016/j.biortech.2020.123155
Lipatova, Z., Van Bergen, N., Stanga, D., Sacher, M., Christodoulou, J., & Segev, N. (2020). TRAPPing a neurological disorder: from yeast to humans. Autophagy, 16(5), 965–966. doi:10.1080/15548627.2020.1736873
Feng, J., Yao, S., Dong, Y., Hu, J., Whiteway, M., & Feng, J. (2020). Nucleotide excision repair protein Rad23 regulates cell virulence independent of Rad4 in Candida albicans. MSphere, 5(1). doi:10.1128/mSphere.00062-20
Russo, M. S. T., Napylov, A., Paquet, A., & Vuckovic, D. (2020). Comparison of N-ethyl maleimide and N-(1-phenylethyl) maleimide for derivatization of biological thiols using liquid chromatography-mass spectrometry. Analytical and Bioanalytical Chemistry, 412(7), 1639–1652. doi:10.1007/s00216-020-02398-x
Kim, M.-S., Moon, M., Fitriana, H. N., Lee, J.-S., Na, J.-G., & Park, G. W. (2020). Pressurized cultivation strategies for improved microbial hydrogen production by Thermococcus onnurineus NA1. Bioprocess and Biosystems Engineering, 43(6), 1119–1122. doi:10.1007/s00449-020-02291-y
Fejes, B., Ouedraogo, J.-P., Fekete, E., Sándor, E., Flipphi, M., Soós, Á., … Karaffa, L. (2020). The effects of external Mn2+ concentration on hyphal morphology and citric acid production are mediated primarily by the NRAMP-family transporter DmtA in Aspergillus niger. Microbial Cell Factories, 19(1), 17. doi:10.1186/s12934-020-1286-7
Schulz, F., Roux, S., Paez-Espino, D., Jungbluth, S., Walsh, D. A., Denef, V. J., … Woyke, T. (2020). Giant virus diversity and host interactions through global metagenomics. Nature, 578(7795), 432–436. doi:10.1038/s41586-020-1957-x

2019

Choi, S.-A., Jeong, Y., Lee, J., Huh, Y. H., Choi, S. H., Kim, H.-S., … Lee, H. U. (2020). Biocompatible liquid-type carbon nanodots (C-paints) as light delivery materials for cell growth and astaxanthin induction of Haematococcus pluvialis. Materials Science & Engineering. C, Materials for Biological Applications, 109(110500), 110500. doi:10.1016/j.msec.2019.110500
Sah, R. G., Nobakht, S., Rajashekar, D., Mouches, P., Forkert, N. D., Sitaram, A., … Barber, P. A. (2020). Temporal evolution and spatial distribution of quantitative T2 MRI following acute ischemia reperfusion injury. International Journal of Stroke: Official Journal of the International Stroke Society, 15(5), 495–506. doi:10.1177/1747493019895673
McWilliams, D. F., Rahman, S., James, R. J. E., Ferguson, E., Kiely, P. D. W., Young, A., & Walsh, D. A. (2019). Disease activity flares and pain flares in an early rheumatoid arthritis inception cohort; characteristics, antecedents and sequelae. BMC Rheumatology, 3(1), 49. doi:10.1186/s41927-019-0100-9
Agrawal, D., Basotra, N., Balan, V., Tsang, A., & Chadha, B. S. (2020). Discovery and expression of thermostable LPMOs from thermophilic fungi for producing efficient lignocellulolytic enzyme cocktails. Applied Biochemistry and Biotechnology, 191(2), 463–481. doi:10.1007/s12010-019-03198-5
Luro, S., Potvin-Trottier, L., Okumus, B., & Paulsson, J. (2020). Isolating live cells after high-throughput, long-term, time-lapse microscopy. Nature Methods, 17(1), 93–100. doi:10.1038/s41592-019-0620-7
Wang, M., Tsang, A., Tam, V., Chan, D., Cao, P., & Wu, E. X. (2020). Multiparametric MR investigation of proteoglycan diffusivity, T2 relaxation, and concentration in an ex vivo model of intervertebral disc degeneration. Journal of Magnetic Resonance Imaging, 51(5), 1390–1400. doi:10.1002/jmri.26979
Napylov, A., Reyes-Garces, N., Gomez-Rios, G., Olkowicz, M., Lendor, S., Monnin, C., … Vuckovic, D. (2020). In vivo solid-phase microextraction for sampling of oxylipins in brain of awake, moving rats. Angewandte Chemie (International Ed. in English), 59(6), 2392–2398. doi:10.1002/anie.201909430
Medkour, Y., Mohammad, K., Arlia-Ciommo, A., Svistkova, V., Dakik, P., Mitrofanova, D., … Titorenko, V. I. (2019). Mechanisms by which PE21, an extract from the white willow Salix alba, delays chronological aging in budding yeast. Oncotarget, 10(56), 5780–5816. doi:10.18632/oncotarget.27209
Riglar, D. T., Richmond, D. L., Potvin-Trottier, L., Verdegaal, A. A., Naydich, A. D., Bakshi, S., … Silver, P. A. (2019). Bacterial variability in the mammalian gut captured by a single-cell synthetic oscillator. Nature Communications, 10(1), 4665. doi:10.1038/s41467-019-12638-z
Sun, Y., Valente-Paterno, M., Bakhtiari, S., Law, C., Zhan, Y., & Zerges, W. (2019). Photosystem biogenesis is localized to the translation zone in the chloroplast of Chlamydomonas. The Plant Cell, 31(12), 3057–3072. doi:10.1105/tpc.19.00263
Daly, P., Peng, M., Di Falco, M., Lipzen, A., Wang, M., Ng, V., … de Vries, R. P. (2019). Glucose-mediated repression of plant biomass utilization in the white-rot fungus Dichomitus squalens. Applied and Environmental Microbiology, 85(23). doi:10.1128/AEM.01828-19
Milev, M. P., Stanga, D., Schänzer, A., Nascimento, A., Saint-Dic, D., Ortez, C., … Jimenez-Mallebrera, C. (2019). Characterization of three TRAPPC11 variants suggests a critical role for the extreme carboxy terminus of the protein. Scientific Reports, 9(1), 14036. doi:10.1038/s41598-019-50415-6
Semana, P., & Powlowski, J. (2019). Four aromatic intradiol ring cleavage dioxygenases from Aspergillus niger. Applied and Environmental Microbiology, 85(23). doi:10.1128/AEM.01786-19
Ashikuzzaman, M., Belasso, C., Kibria, M. G., Bergdahl, A., Gauthier, C. J., & Rivaz, H. (2020). Low rank and sparse decomposition of ultrasound color flow images for suppressing clutter in real-time. IEEE Transactions on Medical Imaging, 39(4), 1073–1084. doi:10.1109/TMI.2019.2941865
Kraemer, S., Ramachandran, A., Colatriano, D., Lovejoy, C., & Walsh, D. A. (2020). Diversity and biogeography of SAR11 bacteria from the Arctic Ocean. The ISME Journal, 14(1), 79–90. doi:10.1038/s41396-019-0499-4
Sonnenberg, R. A., Naz, S., Cougnaud, L., & Vuckovic, D. (2019). Comparison of underivatized silica and zwitterionic sulfobetaine hydrophilic interaction liquid chromatography stationary phases for global metabolomics of human plasma. Journal of Chromatography A, 1608(460419), 460419. doi:10.1016/j.chroma.2019.460419
Huot, Y., Brown, C. A., Potvin, G., Antoniades, D., Baulch, H. M., Beisner, B. E., … Walsh, D. A. (2019). The NSERC Canadian Lake Pulse Network: A national assessment of lake health providing science for water management in a changing climate. The Science of the Total Environment, 695(133668), 133668. doi:10.1016/j.scitotenv.2019.133668
Sparapani, S., & Bachewich, C. (2019). Characterization of a novel separase-interacting protein and candidate new securin, Eip1p, in the fungal pathogen Candida albicans. Molecular Biology of the Cell, 30(19), 2469–2489. doi:10.1091/mbc.E18-11-0696
Choi, S.-A., Lee, S. Y., Lee, J., Cho, J. M., Lee, J.-S., Kim, S. W., … Oh, Y.-K. (2019). Rapid induction of edible lipids in Chlorella by mild electric stimulation. Bioresource Technology, 292(121950), 121950. doi:10.1016/j.biortech.2019.121950
Slobodchikova, I., Sivakumar, R., Rahman, M. S., & Vuckovic, D. (2019). Characterization of phase I and glucuronide phase II metabolites of 17 mycotoxins using liquid chromatography-high-resolution mass spectrometry. Toxins, 11(8), 433. doi:10.3390/toxins11080433
Walsh, D. A., & McWilliams, D. F. (2019). CGRP and painful pathologies other than headache. Handbook of Experimental Pharmacology, 255, 141–167. doi:10.1007/164_2019_242
Lange, L., Barrett, K., Pilgaard, B., Gleason, F., & Tsang, A. (2019). Enzymes of early-diverging, zoosporic fungi. Applied Microbiology and Biotechnology, 103(17), 6885–6902. doi:10.1007/s00253-019-09983-w
Hillson, N., Caddick, M., Cai, Y., Carrasco, J. A., Chang, M. W., Curach, N. C., … Freemont, P. S. (2019). Author Correction: Building a global alliance of biofoundries. Nature Communications, 10(1), 3132. doi:10.1038/s41467-019-10862-1
Min, K., Park, G. W., Yoo, Y. J., & Lee, J.-S. (2019). A perspective on the biotechnological applications of the versatile tyrosinase. Bioresource Technology, 289(121730), 121730. doi:10.1016/j.biortech.2019.121730
Titorenko, V. I. (2019). Aging and age-related disorders: From molecular mechanisms to therapies. International Journal of Molecular Sciences, 20(13), 3280. doi:10.3390/ijms20133280
Ran, T., Saleem, A. M., Shen, Y., Ribeiro, G. O., Beauchemin, K. A., Tsang, A., … McAllister, T. A. (2019). Effects of a recombinant fibrolytic enzyme on fiber digestion, ruminal fermentation, nitrogen balance, and total tract digestibility of heifers fed a high forage diet1. Journal of Animal Science, 97(8), 3578–3587. doi:10.1093/jas/skz216
Costa, A. C. B. P., Omran, R. P., Correia-Mesquita, T. O., Dumeaux, V., & Whiteway, M. (2019). Screening of Candida albicans GRACE library revealed a unique pattern of biofilm formation under repression of the essential gene ILS1. Scientific Reports, 9(1), 9187. doi:10.1038/s41598-019-45624-y
Martins, D., Nguyen, D., & English, A. M. (2019). Ctt1 catalase activity potentiates antifungal azoles in the emerging opportunistic pathogen Saccharomyces cerevisiae. Scientific Reports, 9(1), 9185. doi:10.1038/s41598-019-45070-w
Orabi, E. A., & English, A. M. (2019). Expanding the range of binding energies and oxidizability of biologically relevant S-aromatic interactions: imidazolium and phenolate binding to sulfoxide and sulfone. Physical Chemistry Chemical Physics: PCCP, 21(27), 14620–14628. doi:10.1039/c9cp02332a
Sen, S., Dayanandan, S., Davis, T., Ganesan, R., Jagadish, M. R., Mathew, P. J., & Ravikanth, G. (2019). Origin and evolution of the genus Piper in Peninsular India. Molecular Phylogenetics and Evolution, 138, 102–113. doi:10.1016/j.ympev.2019.05.033
Leclerc, L. M. Y., Soffer, G., Kwan, D. H., & Shih, S. C. C. (2019). A fucosyltransferase inhibition assay using image-analysis and digital microfluidics. Biomicrofluidics, 13(3), 034106. doi:10.1063/1.5088517
Tsang, A. C., Ahmadi, S., Hamilton, J., Gao, J., Virgili, G., Coupland, S. G., & Gottlieb, C. C. (2019). The diagnostic utility of multifocal electroretinography in detecting chloroquine and hydroxychloroquine retinal toxicity. American Journal of Ophthalmology, 206, 132–139. doi:10.1016/j.ajo.2019.04.025
Hillson, N., Caddick, M., Cai, Y., Carrasco, J. A., Chang, M. W., Curach, N. C., … Freemont, P. S. (2019). Building a global alliance of biofoundries. Nature Communications, 10(1), 2040. doi:10.1038/s41467-019-10079-2
Dakik, Paméla, Medkour, Y., Mohammad, K., & Titorenko, V. I. (2019). Mechanisms through which some mitochondria-generated metabolites act as second messengers that are essential contributors to the aging process in eukaryotes across phyla. Frontiers in Physiology, 10, 461. doi:10.3389/fphys.2019.00461
Basotra, N., Dhiman, S. S., Agrawal, D., Sani, R. K., Tsang, A., & Chadha, B. S. (2019). Characterization of a novel Lytic Polysaccharide Monooxygenase from Malbranchea cinnamomea exhibiting dual catalytic behavior. Carbohydrate Research, 478, 46–53. doi:10.1016/j.carres.2019.04.006
Mohammad, K., Dakik, P., Medkour, Y., Mitrofanova, D., & Titorenko, V. I. (2019). Quiescence entry, maintenance, and exit in adult stem cells. International Journal of Molecular Sciences, 20(9), 2158. doi:10.3390/ijms20092158
Georgopoulos, V., Akin-Akinyosoye, K., Zhang, W., McWilliams, D. F., Hendrick, P., & Walsh, D. A. (2019). Quantitative sensory testing and predicting outcomes for musculoskeletal pain, disability, and negative affect: a systematic review and meta-analysis. Pain, 160(9), 1920–1932. doi:10.1097/j.pain.0000000000001590
Jangra, R., Damen, H., & Lee, J. S. (2019). MKP1 acts as a key modulator of stomatal development. Plant Signaling & Behavior, 14(7), 1604017. doi:10.1080/15592324.2019.1604017
James, R. J. E., Walsh, D. A., & Ferguson, E. (2019). Trajectories of pain predict disabilities affecting daily living in arthritis. British Journal of Health Psychology, 24(3), 485–496. doi:10.1111/bjhp.12364
Costanzo, M., Kuzmin, E., van Leeuwen, J., Mair, B., Moffat, J., Boone, C., & Andrews, B. (2019). Global genetic networks and the genotype-to-phenotype relationship. Cell, 177(1), 85–100. doi:10.1016/j.cell.2019.01.033
Massé, S., Botrel, M., Walsh, D. A., & Maranger, R. (2019). Annual nitrification dynamics in a seasonally ice-covered lake. PloS One, 14(3), e0213748. doi:10.1371/journal.pone.0213748
Ashraf, S., Radhi, M., Gowler, P., Burston, J. J., Gandhi, R. D., Thorn, G. J., … de Moor, C. H. (2019). The polyadenylation inhibitor cordycepin reduces pain, inflammation and joint pathology in rodent models of osteoarthritis. Scientific Reports, 9(1), 4696. doi:10.1038/s41598-019-41140-1
Stanga, D., Zhao, Q., Milev, M. P., Saint-Dic, D., Jimenez-Mallebrera, C., & Sacher, M. (2019). TRAPPC11 functions in autophagy by recruiting ATG2B-WIPI4/WDR45 to preautophagosomal membranes. Traffic (Copenhagen, Denmark), 20(5), 325–345. doi:10.1111/tra.12640
Abu-Baker, A., Kharma, N., Perreault, J., Grant, A., Shekarabi, M., Maios, C., … Rouleau, G. A. (2019). RNA-based therapy utilizing oculopharyngeal muscular dystrophy transcript knockdown and replacement. Molecular Therapy. Nucleic Acids, 15, 12–25. doi:10.1016/j.omtn.2019.02.003
Zhang, X., Chen, F., Petrella, A., Chacón-Huete, F., Covone, J., Tsai, T.-W., … Kwan, D. H. (2019). A high-throughput glycosyltransferase inhibition assay for identifying molecules targeting fucosylation in cancer cell-surface modification. ACS Chemical Biology, 14(4), 715–724. doi:10.1021/acschembio.8b01123
Kim, M. W., Jeong, H. Y., Kang, S. J., Jeong, I. H., Choi, M. J., You, Y. M., … Park, Y. S. (2019). Anti-EGF receptor aptamer-guided co-delivery of anti-cancer siRNAs and quantum dots for theranostics of triple-negative breast cancer. Theranostics, 9(3), 837–852. doi:10.7150/thno.30228
Coconi Linares, N., Di Falco, M., Benoit-Gelber, I., Gruben, B. S., Peng, M., Tsang, A., … de Vries, R. P. (2019). The presence of trace components significantly broadens the molecular response of Aspergillus niger to guar gum. New Biotechnology, 51, 57–66. doi:10.1016/j.nbt.2019.02.005
Rastghalam, G., Omran, R. P., Alizadeh, M., Fulton, D., Mallick, J., & Whiteway, M. (2019). MAP kinase regulation of the Candida albicans pheromone pathway. MSphere, 4(1). doi:10.1128/mSphere.00598-18
Burston, J. J., Valdes, A. M., Woodhams, S. G., Mapp, P. I., Stocks, J., Watson, D. J. G., … Chapman, V. (2019). The impact of anxiety on chronic musculoskeletal pain and the role of astrocyte activation. Pain, 160(3), 658–669. doi:10.1097/j.pain.0000000000001445
Dakik, Pamela, McAuley, M., Chancharoen, M., Mitrofanova, D., Lozano Rodriguez, M. E., Baratang Junio, J. A., … Titorenko, V. I. (2019). Pairwise combinations of chemical compounds that delay yeast chronological aging through different signaling pathways display synergistic effects on the extent of aging delay. Oncotarget, 10(3), 313–338. doi:10.18632/oncotarget.26553

2018

Kang, K.-Y., Hwang, K.-R., Park, J.-Y., Lee, J.-P., Kim, J.-S., & Lee, J.-S. (2018). Critical point drying: An effective drying method for direct measurement of the surface area of a pretreated cellulosic biomass. Polymers, 10(6), 676. doi:10.3390/polym10060676
McWilliams, D. F., Kiely, P. D. W., Young, A., Joharatnam, N., Wilson, D., & Walsh, D. A. (2018). Interpretation of DAS28 and its components in the assessment of inflammatory and non-inflammatory aspects of rheumatoid arthritis. BMC Rheumatology, 2(1), 8. doi:10.1186/s41927-018-0016-9
Nwosu, L. N., Gowler, P. R. W., Burston, J. J., Rizoska, B., Tunblad, K., Lindström, E., … Chapman, V. (2018). Analgesic effects of the cathepsin K inhibitor L-006235 in the monosodium iodoacetate model of osteoarthritis pain. Pain Reports (Baltimore, Md.), 3(6), e685. doi:10.1097/PR9.0000000000000685
Brunetti, S. C., Arseneault, M. K. M., & Gulick, P. J. (2018). Characterization of the Esi3/RCI2/PMP3 gene family in the Triticeae. BMC Genomics, 19(1), 898. doi:10.1186/s12864-018-5311-8
Islam, A., Tebbji, F., Mallick, J., Regan, H., Dumeaux, V., Omran, R. P., & Whiteway, M. (2019). Mms21: A putative SUMO E3 ligase in Candida albicans that negatively regulates invasiveness and filamentation, and is required for the genotoxic and cellular stress response. Genetics, 211(2), 579–595. doi:10.1534/genetics.118.301769
Reid, N. E., Ngou, J. S., & Joyce, P. B. M. (2019). Schizosaccharomyces pombe contains separate CC- and A-adding tRNA nucleotidyltransferases. Biochemical and Biophysical Research Communications, 508(3), 785–790. doi:10.1016/j.bbrc.2018.11.131
Choi, S.-A., Oh, Y.-K., Lee, J., Sim, S. J., Hong, M. E., Park, J.-Y., … Lee, J.-S. (2019). High-efficiency cell disruption and astaxanthin recovery from Haematococcus pluvialis cyst cells using room-temperature imidazolium-based ionic liquid/water mixtures. Bioresource Technology, 274, 120–126. doi:10.1016/j.biortech.2018.11.082
Gold, N. D., Fossati, E., Hansen, C. C., DiFalco, M., Douchin, V., & Martin, V. J. J. (2018). A combinatorial approach to study cytochrome P450 enzymes for DE Novo production of steviol glucosides in baker’s yeast. ACS Synthetic Biology, 7(12), 2918–2929. doi:10.1021/acssynbio.8b00470
Ghaddar, N., Hashemidahaj, M., & Findlay, B. L. (2018). Access to high-impact mutations constrains the evolution of antibiotic resistance in soft agar. Scientific Reports, 8(1), 17023. doi:10.1038/s41598-018-34911-9
Stopnicki, B., Blain, M., Cui, Q.-L., Kennedy, T. E., Antel, J. P., Healy, L. M., & Darlington, P. J. (2019). Helper CD4 T cells expressing granzyme B cause glial fibrillary acidic protein fragmentation in astrocytes in an MHCII-independent manner. Glia, 67(4), 582–593. doi:10.1002/glia.23503
Copp, W., O’Flaherty, D. K., & Wilds, C. J. (2018). Covalent capture of OGT’s active site using engineered human-E. coli chimera and intrastrand DNA cross-links. Organic & Biomolecular Chemistry, 16(46), 9053–9058. doi:10.1039/c8ob02453g
Arlia-Ciommo, A., Leonov, A., Mohammad, K., Beach, A., Richard, V. R., Bourque, S. D., … Titorenko, V. I. (2018). Mechanisms through which lithocholic acid delays yeast chronological aging under caloric restriction conditions. Oncotarget, 9(79), 34945–34971. doi:10.18632/oncotarget.26188
Bourgeois, L., Pyne, M. E., & Martin, V. J. J. (2018). A highly characterized synthetic landing pad system for precise multicopy gene integration in yeast. ACS Synthetic Biology, 7(11), 2675–2685. doi:10.1021/acssynbio.8b00339
Grum-Grzhimaylo, A. A., Falkoski, D. L., van den Heuvel, J., Valero-Jiménez, C. A., Min, B., Choi, I.-G., … Debets, A. J. M. (2018). The obligate alkalophilic soda-lake fungus Sodiomyces alkalinus has shifted to a protein diet. Molecular Ecology, 27(23), 4808–4819. doi:10.1111/mec.14912
Carpenter, L., Norton, S., Nikiphorou, E., Kiely, P., Walsh, D. A., Dixey, J., & Young, A. (2018). Validation of methods for converting the original Disease Activity Score (DAS) to the DAS28. Rheumatology International, 38(12), 2297–2305. doi:10.1007/s00296-018-4184-0
Rocha, C., Koury, O. H., Scheede-Bergdahl, C., & Bergdahl, A. (2019). Cardiac mitochondrial respiration following a low-carbohydrate, high-fat diet in apolipoprotein E-deficient mice. Journal of Physiology and Biochemistry, 75(1), 65–72. doi:10.1007/s13105-018-0653-x
Biot-Pelletier, D., Pinel, D., Larue, K., & Martin, V. J. J. (2018). Determinants of selection in yeast evolved by genome shuffling. Biotechnology for Biofuels, 11(1), 282. doi:10.1186/s13068-018-1283-9
Vesth, T. C., Nybo, J. L., Theobald, S., Frisvad, J. C., Larsen, T. O., Nielsen, K. F., … Andersen, M. R. (2018). Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri. Nature Genetics, 50(12), 1688–1695. doi:10.1038/s41588-018-0246-1
Alazi, E., Niu, J., Otto, S. B., Arentshorst, M., Pham, T. T. M., Tsang, A., & Ram, A. F. J. (2019). W361R mutation in GaaR, the regulator of D-galacturonic acid-responsive genes, leads to constitutive production of pectinases in Aspergillus niger. MicrobiologyOpen, 8(5), e00732. doi:10.1002/mbo3.732
Brandl, J., Aguilar-Pontes, M. V., Schäpe, P., Noerregaard, A., Arvas, M., Ram, A. F. J., … Andersen, M. R. (2018). A community-driven reconstruction of the Aspergillus niger metabolic network. Fungal Biology and Biotechnology, 5(1), 16. doi:10.1186/s40694-018-0060-7
Colatriano, D., Tran, P. Q., Guéguen, C., Williams, W. J., Lovejoy, C., & Walsh, D. A. (2018). Genomic evidence for the degradation of terrestrial organic matter by pelagic Arctic Ocean Chloroflexi bacteria. Communications Biology, 1(1), 90. doi:10.1038/s42003-018-0086-7
Fernandes, G. S., Valdes, A. M., Walsh, D. A., Zhang, W., & Doherty, M. (2018). Neuropathic-like knee pain and associated risk factors: a cross-sectional study in a UK community sample. Arthritis Research & Therapy, 20(1), 215. doi:10.1186/s13075-018-1717-6
Martins, D., McKay, G., Sampathkumar, G., Khakimova, M., English, A. M., & Nguyen, D. (2018). Superoxide dismutase activity confers (p)ppGpp-mediated antibiotic tolerance to stationary-phase Pseudomonas aeruginosa. Proceedings of the National Academy of Sciences of the United States of America, 115(39), 9797–9802. doi:10.1073/pnas.1804525115
Orabi, E. A., Center for Research in Molecular Modeling (CERMM), Quebec Network for Research on Protein Function, Engineering, and Applications (PROTEO), and Department of Chemistry and Biochemistry, Concordia University, 7141 Sherbrooke Street West, Montréal, Québec H4B 1R6, Canada. ann. english@concordia. ca, & English, A. M. (2018). Predicting structural and energetic changes in Met-aromatic motifs on methionine oxidation to the sulfoxide and sulfone. Physical Chemistry Chemical Physics: PCCP, 20(35), 23132–23141. doi:10.1039/c8cp03277g
Sacher, M., Shahrzad, N., Kamel, H., & Milev, M. P. (2019). TRAPPopathies: An emerging set of disorders linked to variations in the genes encoding transport protein particle (TRAPP)-associated proteins. Traffic (Copenhagen, Denmark), 20(1), 5–26. doi:10.1111/tra.12615
Kathiresan, M., & English, A. M. (2018). LC-MS/MS proteoform profiling exposes cytochrome c peroxidase self-oxidation in mitochondria and functionally important hole hopping from its heme. Journal of the American Chemical Society, 140(38), 12033–12039. doi:10.1021/jacs.8b05966
Song, L., Ouedraogo, J.-P., Kolbusz, M., Nguyen, T. T. M., & Tsang, A. (2018). Efficient genome editing using tRNA promoter-driven CRISPR/Cas9 gRNA in Aspergillus niger. PloS One, 13(8), e0202868. doi:10.1371/journal.pone.0202868
Milev, M. P., Graziano, C., Karall, D., Kuper, W. F. E., Al-Deri, N., Cordelli, D. M., … van Hasselt, P. M. (2018). Bi-allelic mutations in TRAPPC2L result in a neurodevelopmental disorder and have an impact on RAB11 in fibroblasts. Journal of Medical Genetics, 55(11), 753–764. doi:10.1136/jmedgenet-2018-105441
Xu, H., Whiteway, M., & Jiang, L. (2019). The tricarboxylic acid cycle, cell wall integrity pathway, cytokinesis and intracellular pH homeostasis are involved in the sensitivity of Candida albicans cells to high levels of extracellular calcium. Genomics, 111(6), 1226–1230. doi:10.1016/j.ygeno.2018.08.001
Gruninger, R. J., Nguyen, T. T. M., Reid, I. D., Yanke, J. L., Wang, P., Abbott, D. W., … McAllister, T. (2018). Application of transcriptomics to compare the carbohydrate active enzymes that are expressed by diverse genera of anaerobic fungi to degrade plant cell wall carbohydrates. Frontiers in Microbiology, 9, 1581. doi:10.3389/fmicb.2018.01581
Ribeiro, G. O., Badhan, A., Huang, J., Beauchemin, K. A., Yang, W., Wang, Y., … McAllister, T. A. (2018). New recombinant fibrolytic enzymes for improved in vitro ruminal fiber degradability of barley straw1. Journal of Animal Science, 96(9), 3928–3942. doi:10.1093/jas/sky251
Sabri, T., Pawelek, P. D., & Capobianco, J. A. (2018). Dual activity of Rose Bengal functionalized to albumin-coated lanthanide-doped upconverting nanoparticles: Targeting and photodynamic therapy. ACS Applied Materials & Interfaces, 10(32), 26947–26953. doi:10.1021/acsami.8b08919
Titorenko, V. I. (2018). Molecular and cellular mechanisms of aging and age-related disorders. International Journal of Molecular Sciences, 19(7). doi:10.3390/ijms19072049
Tamnanloo, F., Damen, H., Jangra, R., & Lee, J. S. (2018). MAP KINASE PHOSPHATASE1 controls cell fate transition during stomatal development. Plant Physiology, 178(1), 247–257. doi:10.1104/pp.18.00475
Chourey, S., Ye, Q., Reddy, C. N., Wang, R., Cossette, C., Gravel, S., … Powell, W. S. (2018). Novel highly potent and metabolically resistant oxoeicosanoid (OXE) receptor antagonists that block the actions of the granulocyte chemoattractant 5-oxo-6,8,11,14-eicosatetraenoic acid (5-oxo-ETE). Journal of Medicinal Chemistry, 61(14), 5934–5948. doi:10.1021/acs.jmedchem.8b00154
Gholizadeh, A., Dehghani, H., Khodadadi, M., & Gulick, P. J. (2018). Genetic combining ability of coriander genotypes for agronomic and phytochemical traits in response to contrasting irrigation regimes. PloS One, 13(6), e0199630. doi:10.1371/journal.pone.0199630
Pyne, M. E., Narcross, L., Melgar, M., Kevvai, K., Mookerjee, S., Leite, G. B., & Martin, V. J. J. (2018). An engineered Aro1 protein degradation approach for increased cis,cis-muconic acid biosynthesis in Saccharomyces cerevisiae. Applied and Environmental Microbiology, 84(17). doi:10.1128/AEM.01095-18
Stocks, J., Tang, N. K., Walsh, D. A., Warner, S. C., Harvey, H. L., Jenkins, W., … Valdes, A. M. (2018). Bidirectional association between disturbed sleep and neuropathic pain symptoms: a prospective cohort study in post-total joint replacement participants. Journal of Pain Research, 11, 1087–1093. doi:10.2147/JPR.S149830
Tran, P., Ramachandran, A., Khawasik, O., Beisner, B. E., Rautio, M., Huot, Y., & Walsh, D. A. (2018). Microbial life under ice: Metagenome diversity and in situ activity of Verrucomicrobia in seasonally ice-covered Lakes. Environmental Microbiology, 20(7), 2568–2584. doi:10.1111/1462-2920.14283
Mohammad, K., & Titorenko, V. I. (2018). Yeast chronological aging is linked to cell cycle regulation. Cell Cycle (Georgetown, Tex.), 17(9), 1035–1036. doi:10.1080/15384101.2018.1478670
Vuckovic, D., Department of Chemistry and Biochemistry, Concordia University, 7141 Sherbrooke Street West, Montréal, Québec H4B 1R6, Canada. dajana. vuckovic@concordia. ca. (2018). Improving metabolome coverage and data quality: advancing metabolomics and lipidomics for biomarker discovery. Chemical Communications (Cambridge, England), 54(50), 6728–6749. doi:10.1039/c8cc02592d
Song, L., Wu, S., & Tsang, A. (2018). Phylogenetic analysis of protein family. Methods in Molecular Biology (Clifton, N.J.), 1775, 267–275. doi:10.1007/978-1-4939-7804-5_21
McDonnell, E., Strasser, K., & Tsang, A. (2018). Manual gene curation and functional annotation. Methods in Molecular Biology (Clifton, N.J.), 1775, 185–208. doi:10.1007/978-1-4939-7804-5_16
de Vries, R. P., Lubbers, R., Patyshakuliyeva, A., Wiebenga, A., & Benoit-Gelber, I. (2018). Evolutionary adaptation to generate mutants. Methods in Molecular Biology (Clifton, N.J.), 1775, 133–137. doi:10.1007/978-1-4939-7804-5_12
de Vries, R. P., Grigoriev, I. V., & Tsang, A. (2018). Introduction: Overview of fungal genomics. Methods in Molecular Biology (Clifton, N.J.), 1775, 1–7. doi:10.1007/978-1-4939-7804-5_1
Darlington, P. J., Stopnicki, B., Touil, T., Doucet, J.-S., Fawaz, L., Roberts, M. E., … Bar-Or, A. (2018). Natural killer cells regulate Th17 cells after autologous hematopoietic stem cell transplantation for relapsing remitting multiple sclerosis. Frontiers in Immunology, 9, 834. doi:10.3389/fimmu.2018.00834
Larson, A. A., Baker, P. R., 2nd, Milev, M. P., Press, C. A., Sokol, R. J., Cox, M. O., … Moore, S. A. (2018). TRAPPC11 and GOSR2 mutations associate with hypoglycosylation of α-dystroglycan and muscular dystrophy. Skeletal Muscle, 8(1), 17. doi:10.1186/s13395-018-0163-0
Badhan, A., Huang, J., Wang, Y., Abbott, D. W., Di Falco, M., Tsang, A., & McAllister, T. (2018). Saccharification efficiencies of multi-enzyme complexes produced by aerobic fungi. New Biotechnology, 46, 1–6. doi:10.1016/j.nbt.2018.05.003
Yadao, D.-R. R., MacKenzie, S., & Bergdahl, A. (2018). [Review of Reducing branched-chain amino acid intake to reverse metabolic complications in obesity and type 2 diabetes]. The journal of physiology, 596(16), 3455–3456. doi:10.1113/JP276274
Sun, T., Nitta, Y., Zhang, Q., Wu, D., Tian, H., Lee, J. S., & Zhang, Y. (2018). Antagonistic interactions between two MAP kinase cascades in plant development and immune signaling. EMBO Reports, 19(7). doi:10.15252/embr.201745324

2017

Sarmanova, A., Hall, M., Fernandes, G. S., Bhattacharya, A., Valdes, A. M., Walsh, D. A., … Zhang, W. (2017). Association between ultrasound-detected synovitis and knee pain: a population-based case-control study with both cross-sectional and follow-up data. Arthritis Research & Therapy, 19(1), 281. doi:10.1186/s13075-017-1486-7
Scaduto, C. M., Kabrawala, S., Thomson, G. J., Scheving, W., Ly, A., Anderson, M. Z., … Bennett, R. J. (2017). Epigenetic control of pheromone MAPK signaling determines sexual fecundity in Candida albicans. Proceedings of the National Academy of Sciences of the United States of America, 114(52), 13780–13785. doi:10.1073/pnas.1711141115
Tebung, W. A., Omran, R. P., Fulton, D. L., Morschhäuser, J., & Whiteway, M. (2017). Put3 positively regulates proline utilization in Candida albicans. MSphere, 2(6). doi:10.1128/mSphere.00354-17
Basotra, N., Joshi, S., Satyanarayana, T., Pati, P. K., Tsang, A., & Chadha, B. S. (2018). Expression of catalytically efficient xylanases from thermophilic fungus Malbranchea cinnamomea for synergistically enhancing hydrolysis of lignocellulosics. International Journal of Biological Macromolecules, 108, 185–192. doi:10.1016/j.ijbiomac.2017.11.131
Gruben, B. S., Mäkelä, M. R., Kowalczyk, J. E., Zhou, M., Benoit-Gelber, I., & De Vries, R. P. (2017). Expression-based clustering of CAZyme-encoding genes of Aspergillus niger. BMC Genomics, 18(1), 900. doi:10.1186/s12864-017-4164-x
Tebbji, F., Chen, Y., Sellam, A., & Whiteway, M. (2017). The genomic landscape of the fungus-specific SWI/SNF complex subunit, Snf6, in Candida albicans. MSphere, 2(6). doi:10.1128/mSphere.00497-17
Schoonhoven, N. M., O’Flaherty, D. K., McManus, F. P., Sacre, L., Noronha, A. M., Kornblatt, M. J., & Wilds, C. J. (2017). Altering residue 134 confers an increased substrate range of alkylated nucleosides to the E. coli OGT protein. Molecules (Basel, Switzerland), 22(11). doi:10.3390/molecules22111948
Torres-Beltrán, M., Hawley, A. K., Capelle, D., Zaikova, E., Walsh, D. A., Mueller, A., … Hallam, S. J. (2017). A compendium of geochemical information from the Saanich Inlet water column. Scientific Data, 4, 170159. doi:10.1038/sdata.2017.159
Hawley, A. K., Torres-Beltrán, M., Zaikova, E., Walsh, D. A., Mueller, A., Scofield, M., … Hallam, S. J. (2017). A compendium of multi-omic sequence information from the Saanich Inlet water column. Scientific Data, 4, 170160. doi:10.1038/sdata.2017.160
Williams, N. H., Jenkins, A., Goulden, N., Hoare, Z., Hughes, D. A., Wood, E., … Wilkinson, C. (2017). Subcutaneous Injection of Adalimumab Trial compared with Control (SCIATiC): a randomised controlled trial of adalimumab injection compared with placebo for patients receiving physiotherapy treatment for sciatica. Health Technology Assessment (Winchester, England), 21(60), 1–180. doi:10.3310/hta21600
Leonov, A., Feldman, R., Piano, A., Arlia-Ciommo, A., Lutchman, V., Ahmadi, M., … Titorenko, V. I. (2017). Caloric restriction extends yeast chronological lifespan via a mechanism linking cellular aging to cell cycle regulation, maintenance of a quiescent state, entry into a non-quiescent state and survival in the non-quiescent state. Oncotarget, 8(41), 69328–69350. doi:10.18632/oncotarget.20614
Lin, Y., Marin-Argany, M., Dick, C. J., Redhage, K. R., Blancas-Mejia, L. M., Bulur, P., … Ramirez-Alvarado, M. (2017). Mesenchymal stromal cells protect human cardiomyocytes from amyloid fibril damage. Cytotherapy, 19(12), 1426–1437. doi:10.1016/j.jcyt.2017.08.021
McGrath, C., Tsang, A., Nithianandan, H., Nguyen, E., Bauer, P., & Dennis, K. (2017). Malignant gastric outlet obstruction from pancreatic cancer. Case Reports in Gastroenterology, 11(3), 511–515. doi:10.1159/000480070
Bowden, J. A., Heckert, A., Ulmer, C. Z., Jones, C. M., Koelmel, J. P., Abdullah, L., … Zhou, S. (2017). Harmonizing lipidomics: NIST interlaboratory comparison exercise for lipidomics using SRM 1950-Metabolites in Frozen Human Plasma. The Journal of Lipid Research, 58(12), 2275–2288. doi:10.1194/jlr.M079012
O’Flaherty, D. K., & Wilds, C. J. (2017). AGT activity towards intrastrand crosslinked DNA is modulated by the alkylene linker. Chembiochem: A European Journal of Chemical Biology, 18(23), 2351–2357. doi:10.1002/cbic.201700450
Copp, W., Denisov, A. Y., Xie, J., Noronha, A. M., Liczner, C., Safaee, N., … Gehring, K. (2017). Influence of nucleotide modifications at the C2’ position on the Hoogsteen base-paired parallel-stranded duplex of poly(A) RNA. Nucleic Acids Research, 45(17), 10321–10331. doi:10.1093/nar/gkx713
McWilliams, D. F., & Walsh, D. A. (2017). Pain mechanisms in rheumatoid arthritis. Clinical and Experimental Rheumatology, 35 Suppl 107(5), 94–101. Retrieved from https://www.ncbi.nlm.nih.gov/pubmed/28967354
Gentile, D. A., Berch, O. N., Choo, H., Khoo, A., & Walsh, D. A. (2017). Bedroom media: One risk factor for development. Developmental Psychology, 53(12), 2340–2355. doi:10.1037/dev0000399
Denisov, A. Y., McManus, F. P., O’Flaherty, D. K., Noronha, A. M., & Wilds, C. J. (2017). Structural basis of interstrand cross-link repair by O6-alkylguanine DNA alkyltransferase. Organic & Biomolecular Chemistry, 15(39), 8361–8370. doi:10.1039/c7ob02093g
Kwan, D. H. (2017). Structure-guided directed evolution of glycosidases: A case study in engineering a blood group antigen-cleaving enzyme. Methods in Enzymology, 597, 25–53. doi:10.1016/bs.mie.2017.06.002
Draz, H., Goldberg, A. A., Titorenko, V. I., Tomlinson Guns, E. S., Safe, S. H., & Sanderson, J. T. (2017). Diindolylmethane and its halogenated derivatives induce protective autophagy in human prostate cancer cells via induction of the oncogenic protein AEG-1 and activation of AMP-activated protein kinase (AMPK). Cellular Signalling, 40, 172–182. doi:10.1016/j.cellsig.2017.09.006
Scheede-Bergdahl, C., & Bergdahl, A. (2017). Adaptation of mitochondrial expression and ATP production in dedifferentiating vascular smooth muscle cells. Canadian Journal of Physiology and Pharmacology, 95(12), 1473–1479. doi:10.1139/cjpp-2017-0227
Glory, A., van Oostende, C. T., Geitmann, A., & Bachewich, C. (2017). Depletion of the mitotic kinase Cdc5p in Candida albicans results in the formation of elongated buds that switch to the hyphal fate over time in a Ume6p and Hgc1p-dependent manner. Fungal Genetics and Biology: FG & B, 107, 51–66. doi:10.1016/j.fgb.2017.08.002
Milev, M. P., Grout, M. E., Saint-Dic, D., Cheng, Y.-H. H., Glass, I. A., Hale, C. J., … Edvardson, S. (2017). Mutations in TRAPPC12 manifest in progressive childhood encephalopathy and Golgi dysfunction. The American Journal of Human Genetics, 101(2), 291–299. doi:10.1016/j.ajhg.2017.07.006
Gustafson, M. P., Staff, N. P., Bornschlegl, S., Butler, G. W., Maas, M. L., Kazamel, M., … Dietz, A. B. (2017). Comprehensive immune profiling reveals substantial immune system alterations in a subset of patients with amyotrophic lateral sclerosis. PloS One, 12(7), e0182002. doi:10.1371/journal.pone.0182002
Carvajal Gonczi, C. M., Tabatabaei Shafiei, M., East, A., Martire, E., Maurice-Ventouris, M. H. I., & Darlington, P. J. (2017). Reciprocal modulation of helper Th1 and Th17 cells by the β2-adrenergic receptor agonist drug terbutaline. The FEBS Journal, 284(18), 3018–3028. doi:10.1111/febs.14166
Walsh, D. A., & Stocks, J. (2017). New therapeutic targets for osteoarthritis pain. SLAS Discovery, 22(8), 931–949. doi:10.1177/2472555217716912
Regan, H., Scaduto, C. M., Hirakawa, M. P., Gunsalus, K., Correia-Mesquita, T. O., Sun, Y., … Whiteway, M. (2017). Negative regulation of filamentous growth in Candida albicans by Dig1p. Molecular Microbiology, 105(5), 810–824. doi:10.1111/mmi.13738
Reckziegel, D., Bailey, H., Cottam, W. J., Tench, C. R., Mahajan, R. P., Walsh, D. A., … Auer, D. P. (2017). Imaging pain relief in osteoarthritis (IPRO): protocol of a double-blind randomised controlled mechanistic study assessing pain relief and prediction of duloxetine treatment outcome. BMJ Open, 7(6), e014013. doi:10.1136/bmjopen-2016-014013
Tian, D., Chandra, R. P., Lee, J.-S., Lu, C., & Saddler, J. N. (2017). A comparison of various lignin-extraction methods to enhance the accessibility and ease of enzymatic hydrolysis of the cellulosic component of steam-pretreated poplar. Biotechnology for Biofuels, 10(1), 157. doi:10.1186/s13068-017-0846-5
Ellard, D. R., Underwood, M., Achana, F., Antrobus, J. H., Balasubramanian, S., Brown, S., … Sandhu, H. (2017). Facet joint injections for people with persistent non-specific low back pain (Facet Injection Study): a feasibility study for a randomised controlled trial. Health Technology Assessment (Winchester, England), 21(30), 1–184. doi:10.3310/hta21300
Levtova, N., Healy, L. M., Gonczi, C. M. C., Stopnicki, B., Blain, M., Kennedy, T. E., … Darlington, P. J. (2017). Comparative morphology and phagocytic capacity of primary human adult microglia with time-lapse imaging. Journal of Neuroimmunology, 310, 143–149. doi:10.1016/j.jneuroim.2017.05.012
Medkour, Y., Dakik, P., McAuley, M., Mohammad, K., Mitrofanova, D., & Titorenko, V. I. (2017). Mechanisms underlying the essential role of mitochondrial membrane lipids in yeast chronological aging. Oxidative Medicine and Cellular Longevity, 2017, 2916985. doi:10.1155/2017/2916985
Jones, D. R., Uddin, M. S., Gruninger, R. J., Pham, T. T. M., Thomas, D., Boraston, A. B., … Abbott, D. W. (2017). Discovery and characterization of family 39 glycoside hydrolases from rumen anaerobic fungi with polyspecific activity on rare arabinosyl substrates. The Journal of Biological Chemistry, 292(30), 12606–12620. doi:10.1074/jbc.M117.789008
Cao, P., Hyder, F., Zhou, I. Y., Zhang, J. W., Xie, V. B., Tsang, A., & Wu, E. X. (2017). Simultaneous spin-echo and gradient-echo BOLD measurements by dynamic MRS. NMR in Biomedicine, 30(9). doi:10.1002/nbm.3745
Tsang, A., Lebel, C. A., Bray, S. L., Goodyear, B. G., Hafeez, M., Sotero, R. C., … Frayne, R. (2017). White matter structural connectivity is not correlated to cortical resting-state functional connectivity over the healthy adult lifespan. Frontiers in Aging Neuroscience, 9, 144. doi:10.3389/fnagi.2017.00144
Walsh, D. A. (2017a). [Review of Osteoarthritis: Nerve ablation - a new treatment for OA pain?]. Nature reviews. Rheumatology, 13(7), 393–394. doi:10.1038/nrrheum.2017.78
Lee, J. S. (2017). Purification of plant receptor kinases from plant plasma membranes. Methods in Molecular Biology (Clifton, N.J.), 1621, 47–56. doi:10.1007/978-1-4939-7063-6_5
Gelber, I. B., de Vries, R. P., & Tsang, A. (2017). Microbial interactions. Fungal Genetics and Biology: FG & B, 102, 1–3. doi:10.1016/j.fgb.2017.03.008
Gullick, N. J., Mian, A. N., Ibrahim, F., Walker, D., Hassell, A., Kiely, P. D. W., … TITRATE Programme Investigators. (2017). Predicting responses in patients with rheumatoid arthritis to disease-modifying agents using baseline clinical data. Clinical and Experimental Rheumatology, 35(5), 810–815. Retrieved from https://www.ncbi.nlm.nih.gov/pubmed/28516868
Chourey, S., Ye, Q., Reddy, C. N., Cossette, C., Gravel, S., Zeller, M., … Powell, W. S. (2017). In vivo α-hydroxylation of a 2-alkylindole antagonist of the OXE receptor for the eosinophil chemoattractant 5-oxo-6,8,11,14-eicosatetraenoic acid in monkeys. Biochemical Pharmacology, 138, 107–118. doi:10.1016/j.bcp.2017.04.031
Kathiresan, M., & English, A. M. (2017). LC-MS/MS suggests that hole hopping in cytochrome c peroxidase protects its heme from oxidative modification by excess H2O2. Chemical Science (Royal Society of Chemistry: 2010), 8(2), 1152–1162. doi:10.1039/c6sc03125k
Alazi, E., Khosravi, C., Homan, T. G., du Pré, S., Arentshorst, M., Di Falco, M., … Ram, A. F. J. (2017). The pathway intermediate 2-keto-3-deoxy-L-galactonate mediates the induction of genes involved in D-galacturonic acid utilization in Aspergillus niger. FEBS Letters, 591(10), 1408–1418. doi:10.1002/1873-3468.12654
Gruninger, R. J., Tsang, A., & McAllister, T. A. (2017). Isolation and preparation of extracellular proteins from lignocellulose degrading fungi for comparative proteomic studies using mass spectrometry. Methods in Molecular Biology (Clifton, N.J.), 1588, 299–308. doi:10.1007/978-1-4939-6899-2_22
Gruninger, R. J., Reid, I., Forster, R. J., Tsang, A., & McAllister, T. A. (2017). Identification of genes involved in the degradation of lignocellulose using comparative transcriptomics. Methods in Molecular Biology (Clifton, N.J.), 1588, 279–298. doi:10.1007/978-1-4939-6899-2_21
Leonov, A., Arlia-Ciommo, A., Bourque, S. D., Koupaki, O., Kyryakov, P., Dakik, P., … Titorenko, V. I. (2017). Specific changes in mitochondrial lipidome alter mitochondrial proteome and increase the geroprotective efficiency of lithocholic acid in chronologically aging yeast. Oncotarget, 8(19), 30672–30691. doi:10.18632/oncotarget.16766
Walsh, D. A. (2017b). [Review of Editorial: Arthritis pain: Moving between early- and late-stage disease]. Arthritis & rheumatology, 69(7), 1343–1345. doi:10.1002/art.40126
Dietz, A. B., Dozois, E. J., Fletcher, J. G., Butler, G. W., Radel, D., Lightner, A. L., … Faubion, W. A. (2017). Autologous mesenchymal stem cells, applied in a bioabsorbable matrix, for treatment of perianal fistulas in patients with Crohn’s disease. Gastroenterology, 153(1), 59-62.e2. doi:10.1053/j.gastro.2017.04.001
Bhagavathula, N., Meedidoddi, V., Bourque, S., Vimaladevi, R., Kesavakurup, S., Selvadurai, D., … Krishnappa, C. (2017). Characterization of two novel antimicrobial peptides from the cuticular extracts of the ant Trichomyrmex criniceps (Mayr), (Hymenoptera: Formicidae). Archives of Insect Biochemistry and Physiology, 94(4), e21381. doi:10.1002/arch.21381
Iouk, T., & Titorenko, V. I. (2017). [Review of A laboratory test of evolutionary aging theories]. Aging, 9(3), 600–601. doi:10.18632/aging.101215

2016

Kathiresan, M., & English, A. M. (2017). LC-MS/MS suggests that hole hopping in cytochrome c peroxidase protects its heme from oxidative modification by excess H2O2. Chemical Science (Royal Society of Chemistry: 2010), 8(2), 1152–1162. doi:10.1039/c6sc03125k
Almeida, H., Meurs, M.-J., Kosseim, L., & Tsang, A. (2016). Data sampling and supervised learning for HIV literature screening. IEEE Transactions on Nanobioscience, 15(4), 354–361. doi:10.1109/TNB.2016.2565481
Niu, J., Alazi, E., Reid, I. D., Arentshorst, M., Punt, P. J., Visser, J., … Ram, A. F. J. (2017). An evolutionarily conserved transcriptional activator-repressor module controls expression of genes for D-galacturonic acid utilization in Aspergillus niger. Genetics, 205(1), 169–183. doi:10.1534/genetics.116.194050
Shlaifer, I., Quashie, P. K., Kim, H. Y., & Turnbull, J. L. (2017). Biochemical characterization of TyrA enzymes from Ignicoccus hospitalis and Haemophilus influenzae: A comparative study of the bifunctional and monofunctional dehydrogenase forms. Biochimica et Biophysica Acta, 1865(3), 312–320. doi:10.1016/j.bbapap.2016.12.014
Sitnikov, D. G., Monnin, C. S., & Vuckovic, D. (2016). Systematic assessment of seven solvent and solid-phase extraction methods for metabolomics analysis of human plasma by LC-MS. Scientific Reports, 6, 38885. doi:10.1038/srep38885
Gomez-Perez, A., Kyryakov, P., Burstein, M. T., Asbah, N., Noohi, F., Iouk, T., & Titorenko, V. I. (2016). Empirical validation of a hypothesis of the hormetic selective forces driving the evolution of longevity regulation mechanisms. Frontiers in Genetics, 7, 216. doi:10.3389/fgene.2016.00216
McWilliams, D. F., Ferguson, E., Young, A., Kiely, P. D. W., & Walsh, D. A. (2016). Discordant inflammation and pain in early and established rheumatoid arthritis: Latent Class Analysis of Early Rheumatoid Arthritis Network and British Society for Rheumatology Biologics Register data. Arthritis Research & Therapy, 18(1), 295. doi:10.1186/s13075-016-1186-8
Gafar, A. A., Draz, H. M., Goldberg, A. A., Bashandy, M. A., Bakry, S., Khalifa, M. A., … Sanderson, J. T. (2016). Lithocholic acid induces endoplasmic reticulum stress, autophagy and mitochondrial dysfunction in human prostate cancer cells. PeerJ, 4(e2445), e2445. doi:10.7717/peerj.2445
Yeo, S. H., Kwak, J. H., Kim, Y. U., Lee, J. S., Kim, H. J., Park, K. H., … Yoo, K. D. (2016). Peritoneal dialysis-related peritonitis due to Halomonas hamiltonii: A first case report. Medicine, 95(47), e5424. doi:10.1097/MD.0000000000005424
Sellam, A., & Whiteway, M. (2016). Recent advances on Candida albicans biology and virulence. F1000Research, 5, 2582. doi:10.12688/f1000research.9617.1
van Leeuwen, J., Pons, C., Mellor, J. C., Yamaguchi, T. N., Friesen, H., Koschwanez, J., … Boone, C. (2016). Exploring genetic suppression interactions on a global scale. Science (New York, N.Y.), 354(6312), aag0839–aag0839. doi:10.1126/science.aag0839
Dilokpimol, A., Mäkelä, M. R., Aguilar-Pontes, M. V., Benoit-Gelber, I., Hildén, K. S., & de Vries, R. P. (2016). Diversity of fungal feruloyl esterases: updated phylogenetic classification, properties, and industrial applications. Biotechnology for Biofuels, 9(1), 231. doi:10.1186/s13068-016-0651-6
Staff, N. P., Madigan, N. N., Morris, J., Jentoft, M., Sorenson, E. J., Butler, G., … Windebank, A. J. (2016). Safety of intrathecal autologous adipose-derived mesenchymal stromal cells in patients with ALS. Neurology, 87(21), 2230–2234. doi:10.1212/WNL.0000000000003359
Kyryakov, P., Gomez-Perez, A., Glebov, A., Asbah, N., Bruno, L., Meunier, C., … Titorenko, V. I. (2016). Empirical verification of evolutionary theories of aging. Aging, 8(10), 2568–2589. doi:10.18632/aging.101090
Sen, S., Shivaprakash, K. N., Aravind, N. A., Ravikanth, G., & Dayanandan, S. (2016). Ecological niche modeling for conservation planning of an endemic snail in the verge of becoming a pest in cardamom plantations in the Western Ghats biodiversity hotspot. Ecology and Evolution, 6(18), 6510–6523. doi:10.1002/ece3.2368
Lee, J. S., & De Smet, I. (2016). Fine-tuning development through antagonistic peptides: An emerging theme. Trends in Plant Science, 21(12), 991–993. doi:10.1016/j.tplants.2016.10.003
Xu, W., Kool, D., O’Flaherty, D. K., Keating, A. M., Sacre, L., Egli, M., … Zhao, L. (2016). O6-2’-deoxyguanosine-butylene-O6-2’-deoxyguanosine DNA interstrand cross-links are replication-blocking and mutagenic DNA lesions. Chemical Research in Toxicology, 29(11), 1872–1882. doi:10.1021/acs.chemrestox.6b00278
Cossette, C., Chourey, S., Ye, Q., Nagendra Reddy, C., Gore, V., Gravel, S., … Powell, W. S. (2016). Pharmacokinetics and metabolism of selective oxoeicosanoid (OXE) receptor antagonists and their effects on 5-oxo-6,8,11,14-eicosatetraenoic acid (5-oxo-ETE)-induced granulocyte activation in monkeys. Journal of Medicinal Chemistry, 59(22), 10127–10146. doi:10.1021/acs.jmedchem.6b00895
Basotra, N., Kaur, B., Di Falco, M., Tsang, A., & Chadha, B. S. (2016). Mycothermus thermophilus (Syn. Scytalidium thermophilum): Repertoire of a diverse array of efficient cellulases and hemicellulases in the secretome revealed. Bioresource Technology, 222, 413–421. doi:10.1016/j.biortech.2016.10.018
Shekhar-Guturja, T., Tebung, W. A., Mount, H., Liu, N., Köhler, J. R., Whiteway, M., & Cowen, L. E. (2016). Beauvericin potentiates azole activity via inhibition of multidrug efflux, blocks Candida albicans morphogenesis, and is effluxed via Yor1 and circuitry controlled by Zcf29. Antimicrobial Agents and Chemotherapy, 60(12), 7468–7480. doi:10.1128/AAC.01959-16
Potvin-Trottier, L., Lord, N. D., Vinnicombe, G., & Paulsson, J. (2016). Synchronous long-term oscillations in a synthetic gene circuit. Nature, 538(7626), 514–517. doi:10.1038/nature19841
Dakik, P., & Titorenko, V. I. (2016). Communications between mitochondria, the nucleus, vacuoles, peroxisomes, the endoplasmic reticulum, the plasma membrane, lipid droplets, and the cytosol during yeast chronological aging. Frontiers in Genetics, 7, 177. doi:10.3389/fgene.2016.00177
Costanzo, M., VanderSluis, B., Koch, E. N., Baryshnikova, A., Pons, C., Tan, G., … Boone, C. (2016). A global genetic interaction network maps a wiring diagram of cellular function. Science (New York, N.Y.), 353(6306), aaf1420–aaf1420. doi:10.1126/science.aaf1420
Koehler, K., Milev, M. P., Prematilake, K., Reschke, F., Kutzner, S., Jühlen, R., … Sacher, M. (2017). A novel TRAPPC11 mutation in two Turkish families associated with cerebral atrophy, global retardation, scoliosis, achalasia and alacrima. Journal of Medical Genetics, 54(3), 176–185. doi:10.1136/jmedgenet-2016-104108
Stoett, P., Daszak, P., Romanelli, C., Machalaba, C., Behringer, R., Chalk, F., … Swain, A. (2016). Avoiding catastrophes: seeking synergies among the public health, environmental protection, and human security sectors. The Lancet. Global Health, 4(10), e680-1. doi:10.1016/S2214-109X(16)30173-5
Pakarian, P., & Pawelek, P. D. (2016a). A novel set of vectors for Fur-controlled protein expression under iron deprivation in Escherichia coli. BMC Biotechnology, 16(1), 68. doi:10.1186/s12896-016-0298-1
Tameshige, T., Okamoto, S., Lee, J. S., Aida, M., Tasaka, M., Torii, K. U., & Uchida, N. (2016). A secreted peptide and its receptors shape the auxin response pattern and leaf margin morphogenesis. Current Biology: CB, 26(18), 2478–2485. doi:10.1016/j.cub.2016.07.014
O’Flaherty, D. K., & Wilds, C. J. (2016). Preparation of intrastrand {G}O(6) -alkylene-O(6) {G} cross-linked oligonucleotides. Et al [Current Protocols in Nucleic Acid Chemistry], 66(1), 5.17.1-5.17.24. doi:10.1002/cpnc.14
Chen, B. P., Awasthi, R., Sweet, S. N., Minnella, E. M., Bergdahl, A., Santa Mina, D., … Scheede-Bergdahl, C. (2017). Four-week prehabilitation program is sufficient to modify exercise behaviors and improve preoperative functional walking capacity in patients with colorectal cancer. Supportive Care in Cancer: Official Journal of the Multinational Association of Supportive Care in Cancer, 25(1), 33–40. doi:10.1007/s00520-016-3379-8
Barbhuiya, A. R., Khan, M. L., & Dayanandan, S. (2016). Genetic structure and diversity of natural and domesticated populations of Citrus medica L. in the Eastern Himalayan region of Northeast India. Ecology and Evolution, 6(12), 3898–3911. doi:10.1002/ece3.2174
McWilliams, D. F., & Walsh, D. A. (2016). Factors predicting pain and early discontinuation of tumour necrosis factor-α-inhibitors in people with rheumatoid arthritis: results from the British society for rheumatology biologics register. BMC Musculoskeletal Disorders, 17, 337. doi:10.1186/s12891-016-1192-7
Burston, J. J., Mapp, P. I., Sarmad, S., Barrett, D. A., Niphakis, M. J., Cravatt, B. F., … Chapman, V. (2016). Robust anti-nociceptive effects of monoacylglycerol lipase inhibition in a model of osteoarthritis pain. British Journal of Pharmacology, 173(21), 3134–3144. doi:10.1111/bph.13574
Zandi, K., Butler, G., & Kharma, N. (2016). An adaptive defect weighted sampling algorithm to design pseudoknotted RNA secondary structures. Frontiers in Genetics, 7, 129. doi:10.3389/fgene.2016.00129
Hénault-Ethier, L., Martin, V. J. J., & Gélinas, Y. (2016). Persistence of Escherichia coli in batch and continuous vermicomposting systems. Waste Management (New York, N.Y.), 56, 88–99. doi:10.1016/j.wasman.2016.07.033
Pakarian, P., & Pawelek, P. D. (2016b). Intracellular co-localization of the Escherichia coli enterobactin biosynthetic enzymes EntA, EntB, and EntE. Biochemical and Biophysical Research Communications, 478(1), 25–32. doi:10.1016/j.bbrc.2016.07.105
Lutchman, V., Dakik, P., McAuley, M., Cortes, B., Ferraye, G., Gontmacher, L., … Titorenko, V. I. (2016). Six plant extracts delay yeast chronological aging through different signaling pathways. Oncotarget, 7(32), 50845–50863. doi:10.18632/oncotarget.10689
Narcross, L., Bourgeois, L., Fossati, E., Burton, E., & Martin, V. J. J. (2016). Mining enzyme diversity of transcriptome libraries through DNA synthesis for benzylisoquinoline alkaloid pathway optimization in yeast. ACS Synthetic Biology, 5(12), 1505–1518. doi:10.1021/acssynbio.6b00119
Zerges, W. (2016). [Review of Gene regulation in developing chloroplasts disentangled]. PLoS genetics, 12(7), e1006173. doi:10.1371/journal.pgen.1006173
Rozenberg, A., Rezk, A., Boivin, M.-N., Darlington, P. J., Nyirenda, M., Li, R., … Bar-Or, A. (2016). Human mesenchymal stem cells impact Th17 and Th1 responses through a prostaglandin E2 and myeloid-dependent mechanism. Stem Cells Translational Medicine, 5(11), 1506–1514. doi:10.5966/sctm.2015-0243
Rahim, M. M. A., Vigneault, F., & Zerges, W. (2016). The RNA Structure of cis-acting Translational Elements of the Chloroplast psbC mRNA in Chlamydomonas reinhardtii. Frontiers in Plant Science, 7, 828. doi:10.3389/fpls.2016.00828
Aho, J. M., Dietz, A. B., Radel, D. J., Butler, G. W., Thomas, M., Nelson, T. J., … Wigle, D. A. (2016). Closure of a recurrent bronchopleural fistula using a matrix seeded with patient-derived mesenchymal stem cells. Stem Cells Translational Medicine, 5(10), 1375–1379. doi:10.5966/sctm.2016-0078
Rai, R., Kaur, B., Singh, S., Di Falco, M., Tsang, A., & Chadha, B. S. (2016). Evaluation of secretome of highly efficient lignocellulolytic Penicillium sp. Dal 5 isolated from rhizosphere of conifers. Bioresource Technology, 216, 958–967. doi:10.1016/j.biortech.2016.06.040
Tebung, W. A., Choudhury, B. I., Tebbji, F., Morschhäuser, J., & Whiteway, M. (2016). Rewiring of the Ppr1 zinc cluster transcription factor from purine catabolism to pyrimidine biogenesis in the Saccharomycetaceae. Current Biology: CB, 26(13), 1677–1687. doi:10.1016/j.cub.2016.04.064
Milev, M. P., & Sacher, M. (2016). TRAMM, a new player in CENP-E biology. Molecular & Cellular Oncology, 3(1), e1057314. doi:10.1080/23723556.2015.1057314
Shlaifer, I., & Turnbull, J. L. (2016). Characterization of two key enzymes for aromatic amino acid biosynthesis in symbiotic archaea. Extremophiles: Life under Extreme Conditions, 20(4), 503–514. doi:10.1007/s00792-016-0840-z
Brunet, S., Saint-Dic, D., Milev, M. P., Nilsson, T., & Sacher, M. (2016). The TRAPP subunit Trs130p interacts with the GAP Gyp6p to mediate Ypt6p dynamics at the late Golgi. Frontiers in Cell and Developmental Biology, 4, 48. doi:10.3389/fcell.2016.00048
Carter, A. R., Seaberg, M. H., Fan, H.-F., Sun, G., Wilds, C. J., Li, H.-W., & Perkins, T. T. (2016). Sequence-dependent nanometer-scale conformational dynamics of individual RecBCD-DNA complexes. Nucleic Acids Research, 44(12), 5849–5860. doi:10.1093/nar/gkw445
Tsang, A. C., Virgili, G., Abtahi, M., & Gottlieb, C. C. (2017). Intravitreal dexamethasone implant for the treatment of macular edema in chronic non-infectious uveitis. Ocular Immunology and Inflammation, 25(5), 685–692. doi:10.3109/09273948.2016.1160130
Assi, H. A., Harkness, R. W., 5th, Martin-Pintado, N., Wilds, C. J., Campos-Olivas, R., Mittermaier, A. K., … Damha, M. J. (2016). Stabilization of i-motif structures by 2’-β-fluorination of DNA. Nucleic Acids Research, 44(11), 4998–5009. doi:10.1093/nar/gkw402
Alawi, K. M., Russell, F. A., Aubdool, A. A., Srivastava, S., Riffo-Vasquez, Y., Baldissera, L., Jr, … Brain, S. D. (2017). Transient receptor potential canonical 5 (TRPC5) protects against pain and vascular inflammation in arthritis and joint inflammation. Annals of the Rheumatic Diseases, 76(1), 252–260. doi:10.1136/annrheumdis-2015-208886

2015

Milev, M. P., & Sacher, M. (2016). TRAMM, a new player in CENP-E biology. Molecular & Cellular Oncology, 3(1), e1057314. doi:10.1080/23723556.2015.1057314
Mann, P. A., McLellan, C. A., Koseoglu, S., Si, Q., Kuzmin, E., Flattery, A., … Roemer, T. (2015). Chemical genomics-based antifungal drug discovery: Targeting glycosylphosphatidylinositol (GPI) precursor biosynthesis. ACS Infectious Diseases, 1(1), 59–72. doi:10.1021/id5000212
Medkour, Y., Svistkova, V., & Titorenko, V. I. (2016). Cell-nonautonomous mechanisms underlying cellular and organismal aging. International Review of Cell and Molecular Biology, 321, 259–297. doi:10.1016/bs.ircmb.2015.09.003
Sandhu, H., Ellard, D. R., Achana, F., Antrobus, J. H. L., Balasubramanian, S., Brown, S., … Underwood, M. (2015). Facet-joint injections for people with persistent non-specific low back pain (FIS): study protocol for a randomised controlled feasibility trial. Trials, 16(1), 588. doi:10.1186/s13063-015-1117-z
O’Flaherty, D. K., Guengerich, F. P., Egli, M., & Wilds, C. J. (2015). Backbone flexibility influences nucleotide incorporation by human translesion DNA polymerase η opposite intrastrand cross-linked DNA. Biochemistry, 54(51), 7449–7456. doi:10.1021/acs.biochem.5b01078
Hutchinson, M. I., Powell, A. J., Tsang, A., O’Toole, N., Berka, R. M., Barry, K., … Natvig, D. O. (2016). Genetics of mating in members of the Chaetomiaceae as revealed by experimental and genomic characterization of reproduction in Myceliophthora heterothallica. Fungal Genetics and Biology: FG & B, 86, 9–19. doi:10.1016/j.fgb.2015.11.007
Hong, C. J., Tsang, A. C., Quinn, J. G., Bonaparte, J. P., Stevens, A., & Kilty, S. J. (2015). Anti-IgE monoclonal antibody therapy for the treatment of chronic rhinosinusitis: a systematic review. Systematic Reviews, 4(1), 166. doi:10.1186/s13643-015-0157-5
Kharma, N., Varin, L., Abu-Baker, A., Ouellet, J., Najeh, S., Ehdaeivand, M.-R., … Perreault, J. (2016). Automated design of hammerhead ribozymes and validation by targeting the PABPN1 gene transcript. Nucleic Acids Research, 44(4), e39. doi:10.1093/nar/gkv1111
Mahajan, C., Basotra, N., Singh, S., Di Falco, M., Tsang, A., & Chadha, B. S. (2016). Malbranchea cinnamomea: A thermophilic fungal source of catalytically efficient lignocellulolytic glycosyl hydrolases and metal dependent enzymes. Bioresource Technology, 200, 55–63. doi:10.1016/j.biortech.2015.09.113
Zhan, Y., Dhaliwal, J. S., Adjibade, P., Uniacke, J., Mazroui, R., & Zerges, W. (2015). Localized control of oxidized RNA. Journal of Cell Science, 128(22), 4210–4219. doi:10.1242/jcs.175232
Yan, L., Xiong, J., Lu, H., Lv, Q.-Z., Ma, Q.-Y., Côte, P., … Jiang, Y.-Y. (2015). The role of Mms22p in DNA damage response in Candida albicans. G3 (Bethesda, Md.), 5(12), 2567–2578. doi:10.1534/g3.115.021840
Colatriano, D., & Walsh, D. A. (2015). An aquatic microbial metaproteomics workflow: From cells to tryptic peptides suitable for tandem mass spectrometry-based analysis. Journal of Visualized Experiments: JoVE, (103). doi:10.3791/52827
Nwosu, L. N., & Walsh, D. A. (2015). [Review of Response to: ‘Role of nerve growth factor (NGF) and tropomyosin receptor kinase A (TrkA) in the pathogenesis of osteoarthritis. Might NGF be the link interwinding obesity and OA?’ by Iannone et al]. Annals of the rheumatic diseases, 74(12), e71. doi:10.1136/annrheumdis-2015-208523
Chandra, R. P., Chu, Q., Hu, J., Zhong, N., Lin, M., Lee, J.-S., & Saddler, J. (2016). The influence of lignin on steam pretreatment and mechanical pulping of poplar to achieve high sugar recovery and ease of enzymatic hydrolysis. Bioresource Technology, 199, 135–141. doi:10.1016/j.biortech.2015.09.019
Kim, D.-Y., Vijayan, D., Praveenkumar, R., Han, J.-I., Lee, K., Park, J.-Y., … Oh, Y.-K. (2016). Cell-wall disruption and lipid/astaxanthin extraction from microalgae: Chlorella and Haematococcus. Bioresource Technology, 199, 300–310. doi:10.1016/j.biortech.2015.08.107
Ramachandran, A., & Walsh, D. A. (2015). Investigation of XoxF methanol dehydrogenases reveals new methylotrophic bacteria in pelagic marine and freshwater ecosystems. FEMS Microbiology Ecology, 91(10), fiv105. doi:10.1093/femsec/fiv105
Liang, W.-C., Zhu, W., Mitsuhashi, S., Noguchi, S., Sacher, M., Ogawa, M., … Nishino, I. (2015). Congenital muscular dystrophy with fatty liver and infantile-onset cataract caused by TRAPPC11 mutations: broadening of the phenotype. Skeletal Muscle, 5(1), 29. doi:10.1186/s13395-015-0056-4
Thibodeau, G., Walsh, D. A., & Beisner, B. E. (2015). Rapid eco-evolutionary responses in perturbed phytoplankton communities. Proceedings. Biological Sciences, 282(1814), 20151215. doi:10.1098/rspb.2015.1215
Prieto-Potin, I., Largo, R., Roman-Blas, J. A., Herrero-Beaumont, G., & Walsh, D. A. (2015). Characterization of multinucleated giant cells in synovium and subchondral bone in knee osteoarthritis and rheumatoid arthritis. BMC Musculoskeletal Disorders, 16(1), 226. doi:10.1186/s12891-015-0664-5
Kornblatt, J. A., Quiros, V., & Kornblatt, M. J. (2015). The energetics of streptococcal enolase octamer formation: The quantitative contributions of the last eight amino acids at the carboxy-terminus. PloS One, 10(8), e0135754. doi:10.1371/journal.pone.0135754
Godin, A. G., Rappaz, B., Potvin-Trottier, L., Kennedy, T. E., De Koninck, Y., & Wiseman, P. W. (2015). Spatial intensity distribution analysis reveals abnormal oligomerization of proteins in single cells. Biophysical Journal, 109(4), 710–721. doi:10.1016/j.bpj.2015.06.068
Nwosu, L. N., Mapp, P. I., Chapman, V., & Walsh, D. A. (2016). Blocking the tropomyosin receptor kinase A (TrkA) receptor inhibits pain behaviour in two rat models of osteoarthritis. Annals of the Rheumatic Diseases, 75(6), 1246–1254. doi:10.1136/annrheumdis-2014-207203
Milev, M. P., & Sacher, M. (2015). Mitotic transformation of TRAMM/TrappC12. Oncotarget, 6(20), 17853–17854. doi:10.18632/oncotarget.4843
Benoit, I., Culleton, H., Zhou, M., DiFalco, M., Aguilar-Osorio, G., Battaglia, E., … de Vries, R. P. (2015). Closely related fungi employ diverse enzymatic strategies to degrade plant biomass. Biotechnology for Biofuels, 8(1), 107. doi:10.1186/s13068-015-0285-0
Shadrina, M. S., Peslherbe, G. H., & English, A. M. (2015a). O2 and water migration pathways between the solvent and heme pockets of hemoglobin with open and closed conformations of the distal HisE7. Biochemistry, 54(34), 5279–5289. doi:10.1021/acs.biochem.5b00369
Shadrina, M. S., Peslherbe, G. H., & English, A. M. (2015b). Quaternary-linked changes in structure and dynamics that modulate O2 migration within hemoglobin’s gas diffusion tunnels. Biochemistry, 54(34), 5268–5278. doi:10.1021/acs.biochem.5b00368
Colatriano, D., Ramachandran, A., Yergeau, E., Maranger, R., Gélinas, Y., & Walsh, D. A. (2015). Metaproteomics of aquatic microbial communities in a deep and stratified estuary. Proteomics, 15(20), 3566–3579. doi:10.1002/pmic.201500079
Carnevale, M. L., & Bergdahl, A. (2015). Study of the anti-angiogenic effects of cardiolipin by the aortic ring assay. Canadian Journal of Physiology and Pharmacology, 93(11), 1015–1019. doi:10.1139/cjpp-2015-0016
Horst, R. J., Fujita, H., Lee, J. S., Rychel, A. L., Garrick, J. M., Kawaguchi, M., … Torii, K. U. (2015). Molecular framework of a regulatory circuit initiating two-dimensional spatial patterning of stomatal lineage. PLoS Genetics, 11(7), e1005374. doi:10.1371/journal.pgen.1005374
Larsen, S., Scheede-Bergdahl, C., Whitesell, T., Boushel, R., & Bergdahl, A. (2015). Increased intrinsic mitochondrial respiratory capacity in skeletal muscle from rats with streptozotocin-induced hyperglycemia. Physiological Reports, 3(7), e12467. doi:10.14814/phy2.12467
Volkers, G., Worrall, L. J., Kwan, D. H., Yu, C.-C., Baumann, L., Lameignere, E., … Strynadka, N. C. J. (2015). Structure of human ST8SiaIII sialyltransferase provides insight into cell-surface polysialylation. Nature Structural & Molecular Biology, 22(8), 627–635. doi:10.1038/nsmb.3060
Badhan, A., Wang, Y.-X., Gruninger, R., Patton, D., Powlowski, J., Tsang, A., & McAllister, T. A. (2015). Improvement in saccharification yield of mixed Rumen enzymes by identification of recalcitrant cell wall constituents using enzyme fingerprinting. BioMed Research International, 2015, 562952. doi:10.1155/2015/562952
Avila, J. R., Lee, J. S., & Torii, K. U. (2015). Co-Immunoprecipitation of membrane-bound receptors. The Arabidopsis Book, 13, e0180. doi:10.1199/tab.0180
Lee, J. S., Hnilova, M., Maes, M., Lin, Y.-C. L., Putarjunan, A., Han, S.-K., … Torii, K. U. (2015). Competitive binding of antagonistic peptides fine-tunes stomatal patterning. Nature, 522(7557), 439–443. doi:10.1038/nature14561
O’Flaherty, D. K., & Wilds, C. J. (2015). Synthesis, Characterization, and Repair of a Flexible O(6) -2’-Deoxyguanosine-alkylene-O(6) -2’-deoxyguanosine Intrastrand Cross-Link. Chemistry (Weinheim an Der Bergstrasse, Germany), 21(29), 10522–10529. doi:10.1002/chem.201501103
Whiteway, M., Tebung, W. A., Choudhury, B. I., & Rodríguez-Ortiz, R. (2015). Metabolic regulation in model ascomycetes--adjusting similar genomes to different lifestyles. Trends in Genetics: TIG, 31(8), 445–453. doi:10.1016/j.tig.2015.05.002
Blais, S. P., Kornblatt, J. A., Barbeau, X., Bonnaure, G., Lagüe, P., Chênevert, R., & Lapointe, J. (2015). Correction: tRNAGlu increases the affinity of glutamyl-tRNA synthetase for its inhibitor glutamyl-sulfamoyl-adenosine, an analogue of the aminoacylation reaction intermediate glutamyl-AMP: Mechanistic and evolutionary implications. PloS One, 10(6), e0130238. doi:10.1371/journal.pone.0130238
Moreton, B. J., Walsh, D. A., Turner, K. V., & Lincoln, N. B. (2015). Rasch analysis of the Chronic Pain Acceptance Questionnaire Revised in people with knee osteoarthritis. Journal of Rehabilitation Medicine: Official Journal of the UEMS European Board of Physical and Rehabilitation Medicine, 47(7), 655–661. doi:10.2340/16501977-1977
Gold, N. D., Gowen, C. M., Lussier, F.-X., Cautha, S. C., Mahadevan, R., & Martin, V. J. J. (2015). Metabolic engineering of a tyrosine-overproducing yeast platform using targeted metabolomics. Microbial Cell Factories, 14(1), 73. doi:10.1186/s12934-015-0252-2
Mosley, L. M., Willson, P., Hamilton, B., Butler, G., & Seaman, R. (2015). The capacity of biochar made from common reeds to neutralise pH and remove dissolved metals in acid drainage. Environmental Science and Pollution Research International, 22(19), 15113–15122. doi:10.1007/s11356-015-4735-9
Zhao, H., Ghirlando, R., Alfonso, C., Arisaka, F., Attali, I., Bain, D. L., … Schuck, P. (2015). A multilaboratory comparison of calibration accuracy and the performance of external references in analytical ultracentrifugation. PloS One, 10(5), e0126420. doi:10.1371/journal.pone.0126420
Sun, Y., & Zerges, W. (2015). Translational regulation in chloroplasts for development and homeostasis. Biochimica et Biophysica Acta, 1847(9), 809–820. doi:10.1016/j.bbabio.2015.05.008
DeLoache, W. C., Russ, Z. N., Narcross, L., Gonzales, A. M., Martin, V. J. J., & Dueber, J. E. (2015). An enzyme-coupled biosensor enables (S)-reticuline production in yeast from glucose. Nature Chemical Biology, 11(7), 465–471. doi:10.1038/nchembio.1816
Choi, S.-A., Choi, W.-I., Lee, J.-S., Kim, S. W., Lee, G.-A., Yun, J., & Park, J.-Y. (2015). Hydrothermal acid treatment for sugar extraction from Golenkinia sp. Bioresource Technology, 190, 408–411. doi:10.1016/j.biortech.2015.04.121
Kwan, D. H., Ernst, S., Kötzler, M. P., & Withers, S. G. (2015). Chemoenzymatic synthesis of a type 2 blood group A tetrasaccharide and development of high-throughput assays enables a platform for screening blood group antigen-cleaving enzymes. Glycobiology, 25(8), 806–811. doi:10.1093/glycob/cwv031
Lu, H., Yao, X.-W., Whiteway, M., Xiong, J., Liao, Z.-B., Jiang, Y.-Y., & Cao, Y.-Y. (2015). Loss of RPS41 but not its paralog RPS42 results in altered growth, filamentation and transcriptome changes in Candida albicans. Fungal Genetics and Biology: FG & B, 80, 31–42. doi:10.1016/j.fgb.2015.03.012
Walsh, D. A., Mapp, P. I., & Kelly, S. (2015). Calcitonin gene-related peptide in the joint: contributions to pain and inflammation. British Journal of Clinical Pharmacology, 80(5), 965–978. doi:10.1111/bcp.12669
Milev, M. P., Hasaj, B., Saint-Dic, D., Snounou, S., Zhao, Q., & Sacher, M. (2015). TRAMM/TrappC12 plays a role in chromosome congression, kinetochore stability, and CENP-E recruitment. The Journal of Cell Biology, 209(2), 221–234. doi:10.1083/jcb.201501090
Fossati, E., Narcross, L., Ekins, A., Falgueyret, J.-P., & Martin, V. J. J. (2015). Synthesis of morphinan alkaloids in Saccharomyces cerevisiae. PloS One, 10(4), e0124459. doi:10.1371/journal.pone.0124459
Podjaski, C., Alvarez, J. I., Bourbonniere, L., Larouche, S., Terouz, S., Bin, J. M., … Prat, A. (2015). Netrin 1 regulates blood-brain barrier function and neuroinflammation. Brain: A Journal of Neurology, 138(Pt 6), 1598–1612. doi:10.1093/brain/awv092

2014

Arlia-Ciommo, A., Leonov, A., Piano, A., Svistkova, V., & Titorenko, V. I. (2014). Cell-autonomous mechanisms of chronological aging in the yeast Saccharomyces cerevisiae. Microbial Cell (Graz, Austria), 1(6), 163–178. doi:10.15698/mic2014.06.152
Mann, P. A., McLellan, C. A., Koseoglu, S., Si, Q., Kuzmin, E., Flattery, A., … Roemer, T. (2015). Chemical genomics-based antifungal drug discovery: Targeting glycosylphosphatidylinositol (GPI) precursor biosynthesis. ACS Infectious Diseases, 1(1), 59–72. doi:10.1021/id5000212
Piano, A., & Titorenko, V. I. (2015). The intricate interplay between mechanisms underlying aging and cancer. Aging and Disease, 6(1), 56–75. doi:10.14336/AD.2014.0209
O’Flaherty, D. K., McManus, F. P., Noronha, A. M., & Wilds, C. J. (2014). Synthesis of building blocks and oligonucleotides containing {T}O4-alkylene-O4{T} interstrand cross-links. Et al [Current Protocols in Nucleic Acid Chemistry], 55(1), 5.13.1-19. doi:10.1002/0471142700.nc0513s55
Titorenko, V. I., & Rachubinski, R. A. (2014). Origin and spatiotemporal dynamics of the peroxisomal endomembrane system. Frontiers in Physiology, 5, 493. doi:10.3389/fphys.2014.00493
Ko, N. R., Cheong, J., Noronha, A., Wilds, C. J., & Oh, J. K. (2015). Reductively-sheddable cationic nanocarriers for dual chemotherapy and gene therapy with enhanced release. Colloids and Surfaces. B, Biointerfaces, 126, 178–187. doi:10.1016/j.colsurfb.2014.12.010
Almeida, H., Meurs, M.-J., Kosseim, L., Butler, G., & Tsang, A. (2014). Machine learning for biomedical literature triage. PloS One, 9(12), e115892. doi:10.1371/journal.pone.0115892
Natvig, D. O., Taylor, J. W., Tsang, A., Hutchinson, M. I., & Powell, A. J. (2015). Mycothermus thermophilus gen. et comb. nov., a new home for the itinerant thermophile Scytalidium thermophilum (Torula thermophila). Mycologia, 107(2), 319–327. doi:10.3852/13-399
Tabatabaei Shafiei, M., Carvajal Gonczi, C. M., Rahman, M. S., East, A., François, J., & Darlington, P. J. (2014). Detecting glycogen in peripheral blood mononuclear cells with periodic acid schiff staining. Journal of Visualized Experiments: JoVE, (94). doi:10.3791/52199
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Choudhury, Baharul I., Khan, M. L., & Dayanandan, S. (2014). Genetic relatedness among indigenous rice varieties in the Eastern Himalayan region based on nucleotide sequences of the Waxy gene. BMC Research Notes, 7(1), 953. doi:10.1186/1756-0500-7-953
Shivaprakash, K. N., Ramesha, B. T., Uma Shaanker, R., Dayanandan, S., & Ravikanth, G. (2014). Genetic structure, diversity and long term viability of a medicinal plant, Nothapodytes nimmoniana Graham. (Icacinaceae), in protected and non-protected areas in the Western Ghats biodiversity hotspot. PloS One, 9(12), e112769. doi:10.1371/journal.pone.0112769
Arlia-Ciommo, A., Piano, A., Leonov, A., Svistkova, V., & Titorenko, V. I. (2014). Quasi-programmed aging of budding yeast: a trade-off between programmed processes of cell proliferation, differentiation, stress response, survival and death defines yeast lifespan. Cell Cycle (Georgetown, Tex.), 13(21), 3336–3349. doi:10.4161/15384101.2014.965063
Richard, V. R., Beach, A., Piano, A., Leonov, A., Feldman, R., Burstein, M. T., … Titorenko, V. I. (2014). Mechanism of liponecrosis, a distinct mode of programmed cell death. Cell Cycle (Georgetown, Tex.), 13(23), 3707–3726. doi:10.4161/15384101.2014.965003
Kathiresan, M., Martins, D., & English, A. M. (2014). Respiration triggers heme transfer from cytochrome c peroxidase to catalase in yeast mitochondria. Proceedings of the National Academy of Sciences of the United States of America, 111(49), 17468–17473. doi:10.1073/pnas.1409692111
Chen, B. K., Staff, N. P., Knight, A. M., Nesbitt, J. J., Butler, G. W., Padley, D. J., … Windebank, A. J. (2015). A safety study on intrathecal delivery of autologous mesenchymal stromal cells in rabbits directly supporting Phase I human trials. Transfusion, 55(5), 1013–1020. doi:10.1111/trf.12938
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Isserlin, R., Merico, D., Wang, D., Vuckovic, D., Bousette, N., Gramolini, A. O., … Emili, A. (2015). Systems analysis reveals down-regulation of a network of pro-survival miRNAs drives the apoptotic response in dilated cardiomyopathy. Molecular BioSystems, 11(1), 239–251. doi:10.1039/c4mb00265b
Koury, O. H., Scheede-Bergdahl, C., & Bergdahl, A. (2014). The role of casein in the development of hypercholesterolemia. Journal of Physiology and Biochemistry, 70(4), 1021–1028. doi:10.1007/s13105-014-0365-9
Khalil, S., Jaworski, I., & Pawelek, P. D. (2014). Identification of a surface glutamine residue (Q64) of Escherichia coli EntA required for interaction with EntE. Biochemical and Biophysical Research Communications, 453(3), 625–630. doi:10.1016/j.bbrc.2014.09.131
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Cui, H., Kong, D., Wei, P., Hao, Y., Torii, K. U., Lee, J. S., & Li, J. (2014). SPINDLY, ERECTA, and its ligand STOMAGEN have a role in redox-mediated cortex proliferation in the Arabidopsis root. Molecular Plant, 7(12), 1727–1739. doi:10.1093/mp/ssu106
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Miotto, L. S., de Rezende, C. A., Bernardes, A., Serpa, V. I., Tsang, A., & Polikarpov, I. (2014). The characterization of the endoglucanase Cel12A from Gloeophyllum trabeum reveals an enzyme highly active on β-glucan. PloS One, 9(9), e108393. doi:10.1371/journal.pone.0108393
Arlia-Ciommo, A., Piano, A., Svistkova, V., Mohtashami, S., & Titorenko, V. I. (2014). Mechanisms underlying the anti-aging and anti-tumor effects of lithocholic bile acid. International Journal of Molecular Sciences, 15(9), 16522–16543. doi:10.3390/ijms150916522
Praveenkumar, R., Kim, B., Choi, E., Lee, K., Park, J.-Y., Lee, J.-S., … Oh, Y.-K. (2014). Improved biomass and lipid production in a mixotrophic culture of Chlorella sp. KR-1 with addition of coal-fired flue-gas. Bioresource Technology, 171, 500–505. doi:10.1016/j.biortech.2014.08.112
Morgenstern, I., Powlowski, J., & Tsang, A. (2014). Fungal cellulose degradation by oxidative enzymes: from dysfunctional GH61 family to powerful lytic polysaccharide monooxygenase family. Briefings in Functional Genomics, 13(6), 471–481. doi:10.1093/bfgp/elu032
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Kuzmin, E., Sharifpoor, S., Baryshnikova, A., Costanzo, M., Myers, C. L., Andrews, B. J., & Boone, C. (2014). Synthetic genetic array analysis for global mapping of genetic networks in yeast. Methods in Molecular Biology (Clifton, N.J.), 1205, 143–168. doi:10.1007/978-1-4939-1363-3_10
Chakraborty, P. K., Schmitz-Abe, K., Kennedy, E. K., Mamady, H., Naas, T., Durie, D., … Fleming, M. D. (2014). Mutations in TRNT1 cause congenital sideroblastic anemia with immunodeficiency, fevers, and developmental delay (SIFD). Blood, 124(18), 2867–2871. doi:10.1182/blood-2014-08-591370
Longstaff, H., & Secko, D. M. (2016). Assessing the quality of a deliberative democracy mini-public event about advanced biofuel production and development in Canada. Public Understanding of Science (Bristol, England), 25(2), 252–261. doi:10.1177/0963662514545014
Chapanian, R., Kwan, D. H., Constantinescu, I., Shaikh, F. A., Rossi, N. A. A., Withers, S. G., & Kizhakkedathu, J. N. (2014). Enhancement of biological reactions on cell surfaces via macromolecular crowding. Nature Communications, 5(1), 4683. doi:10.1038/ncomms5683
Wang, Z., Du, S., Dayanandan, S., Wang, D., Zeng, Y., & Zhang, J. (2014). Phylogeny reconstruction and hybrid analysis of populus (Salicaceae) based on nucleotide sequences of multiple single-copy nuclear genes and plastid fragments. PloS One, 9(8), e103645. doi:10.1371/journal.pone.0103645
McManus, F. P., & Wilds, C. J. (2014). O(6) -alkylguanine-DNA alkyltransferase-mediated repair of O(4) -alkylated 2’-deoxyuridines. Chembiochem: A European Journal of Chemical Biology, 15(13), 1966–1977. doi:10.1002/cbic.201402169
Stoppiello, L. A., Mapp, P. I., Wilson, D., Hill, R., Scammell, B. E., & Walsh, D. A. (2014). Structural associations of symptomatic knee osteoarthritis. Arthritis & Rheumatology, 66(11), 3018–3027. doi:10.1002/art.38778
Brunet, S., & Sacher, M. (2014a). Are all multisubunit tethering complexes bona fide tethers? Traffic (Copenhagen, Denmark), 15(11), 1282–1287. doi:10.1111/tra.12200
Gruninger, R. J., Puniya, A. K., Callaghan, T. M., Edwards, J. E., Youssef, N., Dagar, S. S., … Elshahed, M. S. (2014). Anaerobic fungi (phylum Neocallimastigomycota): advances in understanding their taxonomy, life cycle, ecology, role and biotechnological potential. FEMS Microbiology Ecology, 90(1), 1–17. doi:10.1111/1574-6941.12383
Kwan, D. H., & Withers, S. G. (2014). [Review of Periplasmic de-acylase helps bacteria don their biofilm coat]. Proceedings of the National Academy of Sciences of the United States of America, 111(30), 10904–10905. doi:10.1073/pnas.1410789111
Reid, I., O’Toole, N., Zabaneh, O., Nourzadeh, R., Dahdouli, M., Abdellateef, M., … Tsang, A. (2014). SnowyOwl: accurate prediction of fungal genes by using RNA-Seq and homology information to select among ab initio models. BMC Bioinformatics, 15(1), 229. doi:10.1186/1471-2105-15-229
Budak, S. O., Zhou, M., Brouwer, C., Wiebenga, A., Benoit, I., Di Falco, M., … de Vries, R. P. (2014). A genomic survey of proteases in Aspergilli. BMC Genomics, 15(1), 523. doi:10.1186/1471-2164-15-523
Foshag, D., Campbell, C., & Pawelek, P. D. (2014). The C-glycosyltransferase IroB from pathogenic Escherichia coli: identification of residues required for efficient catalysis. Biochimica et Biophysica Acta, 1844(9), 1619–1630. doi:10.1016/j.bbapap.2014.06.010
Martins, D., & English, A. M. (2014). SOD1 oxidation and formation of soluble aggregates in yeast: relevance to sporadic ALS development. Redox Biology, 2, 632–639. doi:10.1016/j.redox.2014.03.005
Choudhury, Baharul Islam, Khan, M. L., & Dayanandan, S. (2014). Patterns of nucleotide diversity and phenotypes of two domestication related genes (OsC1 and Wx) in indigenous rice varieties in Northeast India. BMC Genetics, 15, 71. doi:10.1186/1471-2156-15-71
O’Flaherty, D. K., Denisov, A. Y., Noronha, A. M., & Wilds, C. J. (2014). NMR structure of an ethylene interstrand cross-linked DNA which mimics the lesion formed by 1,3-bis(2-chloroethyl)-1-nitrosourea. ChemMedChem, 9(9), 2099–2103. doi:10.1002/cmdc.201402121
Park, J.-Y., Nam, B., Choi, S.-A., Oh, Y.-K., & Lee, J.-S. (2014). Effects of anionic surfactant on extraction of free fatty acid from Chlorella vulgaris. Bioresource Technology, 166, 620–624. doi:10.1016/j.biortech.2014.05.098
Brunet, S., & Sacher, M. (2014b). In sickness and in health: the role of TRAPP and associated proteins in disease. Traffic (Copenhagen, Denmark), 15(8), 803–818. doi:10.1111/tra.12183
Scheede-Bergdahl, C., Bergdahl, A., Schjerling, P., Qvortrup, K., Koskinen, S. O., & Dela, F. (2014). Exercise-induced regulation of matrix metalloproteinases in the skeletal muscle of subjects with type 2 diabetes. Diabetes & Vascular Disease Research: Official Journal of the International Society of Diabetes and Vascular Disease, 11(5), 324–334. doi:10.1177/1479164114535943
Kolbusz, M. A., Di Falco, M., Ishmael, N., Marqueteau, S., Moisan, M.-C., Baptista, C. da S., … Tsang, A. (2014). Transcriptome and exoproteome analysis of utilization of plant-derived biomass by Myceliophthora thermophila. Fungal Genetics and Biology: FG & B, 72, 10–20. doi:10.1016/j.fgb.2014.05.006
Walsh, D. A., & McWilliams, D. F. (2014). Mechanisms, impact and management of pain in rheumatoid arthritis. Nature Reviews. Rheumatology, 10(10), 581–592. doi:10.1038/nrrheum.2014.64

2013

Lussier, F.-X., Colatriano, D., Wiltshire, Z., Page, J. E., & Martin, V. J. J. (2012). Engineering microbes for plant polyketide biosynthesis. Computational and Structural Biotechnology Journal, 3(4), e201210020. doi:10.5936/csbj.201210020
Park, J.-Y., Oh, Y.-K., Lee, J.-S., Lee, K., Jeong, M.-J., & Choi, S.-A. (2014). Acid-catalyzed hot-water extraction of lipids from Chlorella vulgaris. Bioresource Technology, 153, 408–412. doi:10.1016/j.biortech.2013.12.065
Ling, S. O. S., Storms, R., Zheng, Y., Rodzi, M. R. M., Mahadi, N. M., Illias, R. M., … Abu Bakar, F. D. (2013). Development of a pyrG mutant of Aspergillus oryzae strain S1 as a host for the production of heterologous proteins. TheScientificWorldJournal, 2013, 634317. doi:10.1155/2013/634317
Tsang, A. C., Roth, J., & Gottlieb, C. (2014). Tocilizumab for severe chronic anterior uveitis associated with juvenile idiopathic arthritis in a pediatric patient. Ocular Immunology and Inflammation, 22(2), 155–157. doi:10.3109/09273948.2013.866254
Ahmadi, S., Azizi, B., Tsang, A. C., Coupland, S., Gottlieb, C., & Zackon, D. (2013). Neuroretinitis with branch retinal artery occlusion in a 15-year-old female. Case Reports in Ophthalmology, 4(3), 265–268. doi:10.1159/000356935
Nickelsen, J., & Zerges, W. (2013). Thylakoid biogenesis has joined the new era of bacterial cell biology. Frontiers in Plant Science, 4, 458. doi:10.3389/fpls.2013.00458
Choi, W.-I., Park, J.-Y., Lee, J.-P., Oh, Y.-K., Park, Y. C., Kim, J. S., … Lee, J.-S. (2013). Optimization of NaOH-catalyzed steam pretreatment of empty fruit bunch. Biotechnology for Biofuels, 6(1), 170. doi:10.1186/1754-6834-6-170
Burston, J. J., Sagar, D. R., Shao, P., Bai, M., King, E., Brailsford, L., … Chapman, V. (2013). Cannabinoid CB2 receptors regulate central sensitization and pain responses associated with osteoarthritis of the knee joint. PloS One, 8(11), e80440. doi:10.1371/journal.pone.0080440
McWilliams, D. F., Varughese, S., Young, A., Kiely, P. D., & Walsh, D. A. (2014). Work disability and state benefit claims in early rheumatoid arthritis: the ERAN cohort. Rheumatology (Oxford, England), 53(3), 473–481. doi:10.1093/rheumatology/ket373
Harcus, D., Dignard, D., Lépine, G., Askew, C., Raymond, M., Whiteway, M., & Wu, C. (2013). Comparative xylose metabolism among the Ascomycetes C. albicans, S. stipitis and S. cerevisiae. PloS One, 8(11), e80733. doi:10.1371/journal.pone.0080733
Potvin-Trottier, L., Chen, L., Horwitz, A. R., & Wiseman, P. W. (2013). A nu-space for ICS: characterization and application to measure protein transport in live cells. New Journal of Physics, 15(8), 085006. doi:10.1088/1367-2630/15/8/085006
Sheibani, S., Richard, V. R., Beach, A., Leonov, A., Feldman, R., Mattie, S., … Titorenko, V. I. (2014). Macromitophagy, neutral lipids synthesis, and peroxisomal fatty acid oxidation protect yeast from ‘liponecrosis’, a previously unknown form of programmed cell death. Cell Cycle (Georgetown, Tex.), 13(1), 138–147. doi:10.4161/cc.26885
Hussein, Z., Dryanova, A., Maret, D., & Gulick, P. J. (2014). Gene expression analysis in the roots of salt-stressed wheat and the cytogenetic derivatives of wheat combined with the salt-tolerant wheatgrass, Lophopyrum elongatum. Plant Cell Reports, 33(1), 189–201. doi:10.1007/s00299-013-1522-2
Yu, C.-C., Hill, T., Kwan, D. H., Chen, H.-M., Lin, C.-C., Wakarchuk, W., & Withers, S. G. (2014). A plate-based high-throughput activity assay for polysialyltransferase from Neisseria meningitidis. Analytical Biochemistry, 444, 67–74. doi:10.1016/j.ab.2013.09.030
Sydenham, R., Zheng, Y., Riemens, A., Tsang, A., Powlowski, J., & Storms, R. (2014). Cloning and enzymatic characterization of four thermostable fungal endo-1,4-β-xylanases. Applied Microbiology and Biotechnology, 98(8), 3613–3628. doi:10.1007/s00253-013-5244-8
Seabra, A. B., Ouellet, M., Antonic, M., Chrétien, M. N., & English, A. M. (2013). Catalysis of nitrite generation from nitroglycerin by glyceraldehyde-3-phosphate dehydrogenase (GAPDH). Nitric Oxide: Biology and Chemistry, 35, 116–122. doi:10.1016/j.niox.2013.09.003
Yu, C.-C., Huang, L.-D., Kwan, D. H., Wakarchuk, W. W., Withers, S. G., & Lin, C.-C. (2013). A glyco-gold nanoparticle based assay for α-2,8-polysialyltransferase from Neisseria meningitidis. Chemical Communications (Cambridge, England), 49(86), 10166–10168. doi:10.1039/c3cc45147j
Cobbold, M., De La Peña, H., Norris, A., Polefrone, J. M., Qian, J., English, A. M., … Engelhard, V. H. (2013). MHC class I-associated phosphopeptides are the targets of memory-like immunity in leukemia. Science Translational Medicine, 5(203), 203ra125. doi:10.1126/scitranslmed.3006061
Bemis, S. M., Lee, J. S., Shpak, E. D., & Torii, K. U. (2013). Regulation of floral patterning and organ identity by Arabidopsis ERECTA-family receptor kinase genes. Journal of Experimental Botany, 64(17), 5323–5333. doi:10.1093/jxb/ert270
Lee, J. Y., Kim, S. H., Ko, A.-R., Lee, J. S., Yu, J. H., Seo, J. H., … Cho, S.-R. (2013). Therapeutic effects of repetitive transcranial magnetic stimulation in an animal model of Parkinson’s disease. Brain Research, 1537, 290–302. doi:10.1016/j.brainres.2013.08.051
Gawand, P., Hyland, P., Ekins, A., Martin, V. J. J., & Mahadevan, R. (2013). Novel approach to engineer strains for simultaneous sugar utilization. Metabolic Engineering, 20, 63–72. doi:10.1016/j.ymben.2013.08.003
Epp, E., Nazarova, E., Regan, H., Douglas, L. M., Konopka, J. B., Vogel, J., & Whiteway, M. (2013). Clathrin- and Arp2/3-independent endocytosis in the fungal pathogen Candida albicans. MBio, 4(5), e00476-13. doi:10.1128/mBio.00476-13
Deshpande, R., Asiedu, M. K., Klebig, M., Sutor, S., Kuzmin, E., Nelson, J., … Myers, C. L. (2013). A comparative genomic approach for identifying synthetic lethal interactions in human cancer. Cancer Research, 73(20), 6128–6136. doi:10.1158/0008-5472.CAN-12-3956
Goldberg, A. A., Titorenko, V. I., Beach, A., & Sanderson, J. T. (2013). Bile acids induce apoptosis selectively in androgen-dependent and -independent prostate cancer cells. PeerJ, 1, e122. doi:10.7717/peerj.122
Beach, A., Richard, V. R., Leonov, A., Burstein, M. T., Bourque, S. D., Koupaki, O., … Titorenko, V. I. (2013). Mitochondrial membrane lipidome defines yeast longevity. Aging, 5(7), 551–574. doi:10.18632/aging.100578
Pereira, E. O., Tsang, A., McAllister, T. A., & Menassa, R. (2013). The production and characterization of a new active lipase from Acremonium alcalophilum using a plant bioreactor. Biotechnology for Biofuels, 6, 111. doi:10.1186/1754-6834-6-111
Brunet, S., Shahrzad, N., Saint-Dic, D., Dutczak, H., & Sacher, M. (2013). A trs20 mutation that mimics an SEDT-causing mutation blocks selective and non-selective autophagy: a model for TRAPP III organization. Traffic (Copenhagen, Denmark), 14(10), 1091–1104. doi:10.1111/tra.12095
Goring, M. E., Leibovitch, M., Gea-Mallorqui, E., Karls, S., Richard, F., Hanic-Joyce, P. J., & Joyce, P. B. M. (2013). The ability of an arginine to tryptophan substitution in Saccharomyces cerevisiae tRNA nucleotidyltransferase to alleviate a temperature-sensitive phenotype suggests a role for motif C in active site organization. Biochimica et Biophysica Acta, 1834(10), 2097–2106. doi:10.1016/j.bbapap.2013.07.003
Pincus, T., Holt, N., Vogel, S., Underwood, M., Savage, R., Walsh, D. A., & Taylor, S. J. C. (2013). Cognitive and affective reassurance and patient outcomes in primary care: a systematic review. Pain, 154(11), 2407–2416. doi:10.1016/j.pain.2013.07.019
Ashraf, S., Mapp, P. I., Burston, J., Bennett, A. J., Chapman, V., & Walsh, D. A. (2014). Augmented pain behavioural responses to intra-articular injection of nerve growth factor in two animal models of osteoarthritis. Annals of the Rheumatic Diseases, 73(9), 1710–1718. doi:10.1136/annrheumdis-2013-203416
Martins, D., Kathiresan, M., & English, A. M. (2013). Cytochrome c peroxidase is a mitochondrial heme-based H2O2 sensor that modulates antioxidant defense. Free Radical Biology & Medicine, 65, 541–551. doi:10.1016/j.freeradbiomed.2013.06.037
Bögershausen, N., Shahrzad, N., Chong, J. X., von Kleist-Retzow, J.-C., Stanga, D., Li, Y., … Lamont, R. E. (2013). Recessive TRAPPC11 mutations cause a disease spectrum of limb girdle muscular dystrophy and myopathy with movement disorder and intellectual disability. The American Journal of Human Genetics, 93(1), 181–190. doi:10.1016/j.ajhg.2013.05.028
Beach, A., & Titorenko, V. I. (2013). Essential roles of peroxisomally produced and metabolized biomolecules in regulating yeast longevity. Sub-Cellular Biochemistry, 69, 153–167. doi:10.1007/978-94-007-6889-5_9
Leonov, A., & Titorenko, V. I. (2013). A network of interorganellar communications underlies cellular aging. IUBMB Life, 65(8), 665–674. doi:10.1002/iub.1183
Safaee, N., Noronha, A. M., Rodionov, D., Kozlov, G., Wilds, C. J., Sheldrick, G. M., & Gehring, K. (2013). Structure of the parallel duplex of poly(A) RNA: evaluation of a 50 year-old prediction. Angewandte Chemie (International Ed. in English), 52(39), 10370–10373. doi:10.1002/anie.201303461
Choudhury, B., Khan, M. L., & Dayanandan, S. (2013). Genetic structure and diversity of indigenous rice (Oryza sativa) varieties in the Eastern Himalayan region of Northeast India. SpringerPlus, 2(1), 228. doi:10.1186/2193-1801-2-228
Simon, D. F., Domingos, R. F., Hauser, C., Hutchins, C. M., Zerges, W., & Wilkinson, K. J. (2013). Transcriptome sequencing (RNA-seq) analysis of the effects of metal nanoparticle exposure on the transcriptome of Chlamydomonas reinhardtii. Applied and Environmental Microbiology, 79(16), 4774–4785. doi:10.1128/AEM.00998-13
Sagar, D. R., Ashraf, S., Xu, L., Burston, J. J., Menhinick, M. R., Poulter, C. L., … Chapman, V. (2014). Osteoprotegerin reduces the development of pain behaviour and joint pathology in a model of osteoarthritis. Annals of the Rheumatic Diseases, 73(8), 1558–1565. doi:10.1136/annrheumdis-2013-203260
Leibovitch, M., Bublak, D., Hanic-Joyce, P. J., Tillmann, B., Flinner, N., Amsel, D., … Schleiff, E. (2013). The folding capacity of the mature domain of the dual-targeted plant tRNA nucleotidyltransferase influences organelle selection. The Biochemical Journal, 453(3), 401–412. doi:10.1042/BJ20121577
Wagih, O., Usaj, M., Baryshnikova, A., VanderSluis, B., Kuzmin, E., Costanzo, M., … Parts, L. (2013). SGAtools: one-stop analysis and visualization of array-based genetic interaction screens. Nucleic Acids Research, 41(Web Server issue), W591-6. doi:10.1093/nar/gkt400
McWilliams, D. F., Kiely, P. D. W., Young, A., & Walsh, D. A. (2013). Baseline factors predicting change from the initial DMARD treatment during the first 2 years of rheumatoid arthritis: experience in the ERAN inception cohort. BMC Musculoskeletal Disorders, 14(1), 153. doi:10.1186/1471-2474-14-153
Clarke, S. P., Moreton, B. J., das Nair, R., Walsh, D. A., & Lincoln, N. B. (2014). Personal experience of osteoarthritis and pain questionnaires: mapping items to themes. Disability and Rehabilitation, 36(2), 163–169. doi:10.3109/09638288.2013.782364
Mallick, J., & Whiteway, M. (2013). The evolutionary rewiring of the ribosomal protein transcription pathway modifies the interaction of transcription factor heteromer Ifh1-Fhl1 (interacts with forkhead 1-forkhead-like 1) with the DNA-binding specificity element. The Journal of Biological Chemistry, 288(24), 17508–17519. doi:10.1074/jbc.M112.436683
Xiao, M., Zhang, Y., Chen, X., Lee, E.-J., Barber, C. J. S., Chakrabarty, R., … Sensen, C. W. (2013). Transcriptome analysis based on next-generation sequencing of non-model plants producing specialized metabolites of biotechnological interest. Journal of Biotechnology, 166(3), 122–134. doi:10.1016/j.jbiotec.2013.04.004
Lee, Y.-C., Huh, Y. S., Farooq, W., Chung, J., Han, J.-I., Shin, H.-J., … Park, J.-Y. (2013). Lipid extractions from docosahexaenoic acid (DHA)-rich and oleaginous Chlorella sp. biomasses by organic-nanoclays. Bioresource Technology, 137, 74–81. doi:10.1016/j.biortech.2013.03.090
Zhao, J.-L., Zhang, L., Dayanandan, S., Nagaraju, S., Liu, D.-M., & Li, Q.-M. (2013). Tertiary origin and pleistocene diversification of dragon blood tree (Dracaena cambodiana-Asparagaceae) populations in the Asian tropical forests. PloS One, 8(4), e60102. doi:10.1371/journal.pone.0060102
Richard, V. R., Leonov, A., Beach, A., Burstein, M. T., Koupaki, O., Gomez-Perez, A., … Titorenko, V. I. (2013). Macromitophagy is a longevity assurance process that in chronologically aging yeast limited in calorie supply sustains functional mitochondria and maintains cellular lipid homeostasis. Aging, 5(4), 234–269. doi:10.18632/aging.100547
Wheller, L., Carman, N., & Butler, G. (2013). Unilesional self-limited Langerhans cell histiocytosis: a case report and review of the literature. Journal of Cutaneous Pathology, 40(6), 595–599. doi:10.1111/cup.12121
Choi, M.-K., Han, J.-M., Kim, H.-G., Lee, J.-S., Lee, J.-S., Wang, J.-H., … Son, C.-G. (2013). Aqueous extract of Artemisia capillaris exerts hepatoprotective action in alcohol-pyrazole-fed rat model. Journal of Ethnopharmacology, 147(3), 662–670. doi:10.1016/j.jep.2013.03.065
Bajwa, P. K., Ho, C.-Y., Chan, C.-K., Martin, V. J. J., Trevors, J. T., & Lee, H. (2013). Transcriptional profiling of Saccharomyces cerevisiae T2 cells upon exposure to hardwood spent sulphite liquor: comparison to acetic acid, furfural and hydroxymethylfurfural. Antonie van Leeuwenhoek, 103(6), 1281–1295. doi:10.1007/s10482-013-9909-1

2012

Lussier, F.-X., Colatriano, D., Wiltshire, Z., Page, J. E., & Martin, V. J. J. (2012). Engineering microbes for plant polyketide biosynthesis. Computational and Structural Biotechnology Journal, 3(4), e201210020. doi:10.5936/csbj.201210020
Moheb, A., Grondin, M., Ibrahim, R. K., Roy, R., & Sarhan, F. (2013). Winter wheat hull (husk) is a valuable source for tricin, a potential selective cytotoxic agent. Food Chemistry, 138(2–3), 931–937. doi:10.1016/j.foodchem.2012.09.129
Moheb, A., Agharbaoui, Z., Kanapathy, F., Ibrahim, R. K., Roy, R., & Sarhan, F. (2013). Tricin biosynthesis during growth of wheat under different abiotic stresses. Plant Science: An International Journal of Experimental Plant Biology, 201–202, 115–120. doi:10.1016/j.plantsci.2012.12.005
Sun, G., Noronha, A. M., Miller, P. S., & Wilds, C. J. (2012). Synthesis of building blocks and oligonucleotides with {T}N3-alkylene-N3{T} cross-links. Et al [Current Protocols in Nucleic Acid Chemistry], Chapter 5(1), Unit5.11. doi:10.1002/0471142700.nc0511s51
Yerko, V., Sulea, T., Ekiel, I., Harcus, D., Baardsnes, J., Cygler, M., … Wu, C. (2013). Structurally unique interaction of RBD-like and PH domains is crucial for yeast pheromone signaling. Molecular Biology of the Cell, 24(3), 409–420. doi:10.1091/mbc.E12-07-0516
Wieczorek, A. S., & Martin, V. J. J. (2012). Effects of synthetic cohesin-containing scaffold protein architecture on binding dockerin-enzyme fusions on the surface of Lactococcus lactis. Microbial Cell Factories, 11(1), 160. doi:10.1186/1475-2859-11-160
Burton, E., & Martin, V. J. J. (2012). Proteomic analysis of Clostridium thermocellum ATCC 27405 reveals the upregulation of an alternative transhydrogenase-malate pathway and nitrogen assimilation in cells grown on cellulose. Canadian Journal of Microbiology, 58(12), 1378–1388. doi:10.1139/cjm-2012-0412
Schottkowski, M., Peters, M., Zhan, Y., Rifai, O., Zhang, Y., & Zerges, W. (2012). Biogenic membranes of the chloroplast in Chlamydomonas reinhardtii. Proceedings of the National Academy of Sciences of the United States of America, 109(47), 19286–19291. doi:10.1073/pnas.1209860109
Pierce, J. V., Dignard, D., Whiteway, M., & Kumamoto, C. A. (2013). Normal adaptation of Candida albicans to the murine gastrointestinal tract requires Efg1p-dependent regulation of metabolic and host defense genes. Eukaryotic Cell, 12(1), 37–49. doi:10.1128/EC.00236-12
Titorenko, V. I., & Harkness, T. A. A. (2012). The spatiotemporal dynamics of longevity-defining cellular processes and its modulation by genetic, dietary, and pharmacological anti-aging interventions. Frontiers in Physiology, 3, 419. doi:10.3389/fphys.2012.00419
Hagel, J. M., Beaudoin, G. A. W., Fossati, E., Ekins, A., Martin, V. J. J., & Facchini, P. J. (2012). Characterization of a flavoprotein oxidase from opium poppy catalyzing the final steps in sanguinarine and papaverine biosynthesis. The Journal of Biological Chemistry, 287(51), 42972–42983. doi:10.1074/jbc.M112.420414
Walsh, D. A., & McWilliams, D. F. (2012). Pain in rheumatoid arthritis. Current Pain and Headache Reports, 16(6), 509–517. doi:10.1007/s11916-012-0303-x
Bojko, B., Cudjoe, E., Gómez-Ríos, G. A., Gorynski, K., Jiang, R., Reyes-Garcés, N., … Pawliszyn, J. (2012). SPME--quo vadis? Analytica Chimica Acta, 750, 132–151. doi:10.1016/j.aca.2012.06.052
Choi, J. Y., Kim, C. H., Jeon, T. J., Cho, W. G., Lee, J. S., Lee, S. J., … Ryu, Y. H. (2012). Evaluation of dopamine transporters and D2 receptors in hemiparkinsonian rat brains in vivo using consecutive PET scans of [18F]FPCIT and [18F]fallypride. Applied Radiation and Isotopes: Including Data, Instrumentation and Methods for Use in Agriculture, Industry and Medicine, 70(12), 2689–2694. doi:10.1016/j.apradiso.2012.08.005
Safaee, N., Kozlov, G., Noronha, A. M., Xie, J., Wilds, C. J., & Gehring, K. (2012). Interdomain allostery promotes assembly of the poly(A) mRNA complex with PABP and eIF4G. Molecular Cell, 48(3), 375–386. doi:10.1016/j.molcel.2012.09.001
Ryan, O., Shapiro, R. S., Kurat, C. F., Mayhew, D., Baryshnikova, A., Chin, B., … Boone, C. (2012). Global gene deletion analysis exploring yeast filamentous growth. Science (New York, N.Y.), 337(6100), 1353–1356. doi:10.1126/science.1224339
Sellam, A., Tebbji, F., Whiteway, M., & Nantel, A. (2012). A novel role for the transcription factor Cwt1p as a negative regulator of nitrosative stress in Candida albicans. PloS One, 7(8), e43956. doi:10.1371/journal.pone.0043956
Park, J.-Y., Kang, M., Kim, J. S., Lee, J.-P., Choi, W.-I., & Lee, J.-S. (2012). Enhancement of enzymatic digestibility of Eucalyptus grandis pretreated by NaOH catalyzed steam explosion. Bioresource Technology, 123, 707–712. doi:10.1016/j.biortech.2012.07.091
Beach, A., Burstein, M. T., Richard, V. R., Leonov, A., Levy, S., & Titorenko, V. I. (2012). Integration of peroxisomes into an endomembrane system that governs cellular aging. Frontiers in Physiology, 3, 283. doi:10.3389/fphys.2012.00283
Burstein, M. T., Kyryakov, P., Beach, A., Richard, V. R., Koupaki, O., Gomez-Perez, A., … Titorenko, V. I. (2012). Lithocholic acid extends longevity of chronologically aging yeast only if added at certain critical periods of their lifespan. Cell Cycle (Georgetown, Tex.), 11(18), 3443–3462. doi:10.4161/cc.21754
Yeung, J. C. Y., de Lannoy, I., Gien, B., Vuckovic, D., Yang, Y., Bojko, B., & Pawliszyn, J. (2012). Semi-automated in vivo solid-phase microextraction sampling and the diffusion-based interface calibration model to determine the pharmacokinetics of methoxyfenoterol and fenoterol in rats. Analytica Chimica Acta, 742, 37–44. doi:10.1016/j.aca.2012.01.034
McManus, F. P., O’Flaherty, D. K., Noronha, A. M., & Wilds, C. J. (2012). O4-alkyl-2’-deoxythymidine cross-linked DNA to probe recognition and repair by O6-alkylguanine DNA alkyltransferases. Organic & Biomolecular Chemistry, 10(35), 7078–7090. doi:10.1039/c2ob25705j
Kane, K., Moheb, A., Fukushi, Y., Roy, R., Hüner, N. P. A., Ibrahim, R. K., & Sarhan, F. (2012). Daphnetin methylation stabilizes the activity of phosphoribulokinase in wheat during cold acclimation. Biochemistry and Cell Biology, 90(5), 657–666. doi:10.1139/o2012-023
Han, J.-M., Kim, H.-G., Choi, M.-K., Lee, J.-S., Park, H.-J., Wang, J.-H., … Son, C.-G. (2012). Aqueous extract of Artemisia iwayomogi Kitamura attenuates cholestatic liver fibrosis in a rat model of bile duct ligation. Food and Chemical Toxicology: An International Journal Published for the British Industrial Biological Research Association, 50(10), 3505–3513. doi:10.1016/j.fct.2012.07.018
Martín-Pintado, N., Yahyaee-Anzahaee, M., Campos-Olivas, R., Noronha, A. M., Wilds, C. J., Damha, M. J., & González, C. (2012). The solution structure of double helical arabino nucleic acids (ANA and 2’F-ANA): effect of arabinoses in duplex-hairpin interconversion. Nucleic Acids Research, 40(18), 9329–9339. doi:10.1093/nar/gks672
Chen, L., Vicente-Manzanares, M., Potvin-Trottier, L., Wiseman, P. W., & Horwitz, A. R. (2012). The integrin-ligand interaction regulates adhesion and migration through a molecular clutch. PloS One, 7(7), e40202. doi:10.1371/journal.pone.0040202
Kyryakov, P., Beach, A., Richard, V. R., Burstein, M. T., Leonov, A., Levy, S., & Titorenko, V. I. (2012). Caloric restriction extends yeast chronological lifespan by altering a pattern of age-related changes in trehalose concentration. Frontiers in Physiology, 3, 256. doi:10.3389/fphys.2012.00256
Strasser, K., Bloomfield, G., MacWilliams, A., Ceccarelli, A., MacWilliams, H., & Tsang, A. (2012). A retinoblastoma orthologue is a major regulator of S-phase, mitotic, and developmental gene expression in Dictyostelium. PloS One, 7(6), e39914. doi:10.1371/journal.pone.0039914
Floudas, D., Binder, M., Riley, R., Barry, K., Blanchette, R. A., Henrissat, B., … Hibbett, D. S. (2012). The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science (New York, N.Y.), 336(6089), 1715–1719. doi:10.1126/science.1221748
Tattoli, I., Sorbara, M. T., Vuckovic, D., Ling, A., Soares, F., Carneiro, L. A. M., … Girardin, S. E. (2012). Amino acid starvation induced by invasive bacterial pathogens triggers an innate host defense program. Cell Host & Microbe, 11(6), 563–575. doi:10.1016/j.chom.2012.04.012
Shadrina, M. S., English, A. M., & Peslherbe, G. H. (2012). Effective simulations of gas diffusion through kinetically accessible tunnels in multisubunit proteins: O2 pathways and escape routes in T-state deoxyhemoglobin. Journal of the American Chemical Society, 134(27), 11177–11184. doi:10.1021/ja300903c
Vuckovic, D. (2012a). Bioanalysis young investigator: Dajana Vuckovic. Bioanalysis, 4(10), 1155–1157. doi:10.4155/bio.12.99
Brunet, S., Noueihed, B., Shahrzad, N., Saint-Dic, D., Hasaj, B., Guan, T. L., … Sacher, M. (2012). The SMS domain of Trs23p is responsible for the in vitro appearance of the TRAPP I complex in Saccharomyces cerevisiae. Cellular Logistics, 2(1), 28–42. doi:10.4161/cl.19414
Mapp, P. I., & Walsh, D. A. (2012). Mechanisms and targets of angiogenesis and nerve growth in osteoarthritis. Nature Reviews. Rheumatology, 8(7), 390–398. doi:10.1038/nrrheum.2012.80
Meurs, M.-J., Murphy, C., Morgenstern, I., Butler, G., Powlowski, J., Tsang, A., & Witte, R. (2012). Semantic text mining support for lignocellulose research. BMC Medical Informatics and Decision Making, 12 Suppl 1(S1), S5. doi:10.1186/1472-6947-12-S1-S5
Vuckovic, D. (2012b). Current trends and challenges in sample preparation for global metabolomics using liquid chromatography-mass spectrometry. Analytical and Bioanalytical Chemistry, 403(6), 1523–1548. doi:10.1007/s00216-012-6039-y
McWilliams, D. F., Zhang, W., Mansell, J. S., Kiely, P. D. W., Young, A., & Walsh, D. A. (2012). Predictors of change in bodily pain in early rheumatoid arthritis: an inception cohort study. Arthritis Care & Research, 64(10), 1505–1513. doi:10.1002/acr.21723
Morgenstern, I., Powlowski, J., Ishmael, N., Darmond, C., Marqueteau, S., Moisan, M.-C., … Tsang, A. (2012). A molecular phylogeny of thermophilic fungi. Fungal Biology, 116(4), 489–502. doi:10.1016/j.funbio.2012.01.010
Bojko, B., Vuckovic, D., & Pawliszyn, J. (2012). Comparison of solid phase microextraction versus spectroscopic techniques for binding studies of carbamazepine. Journal of Pharmaceutical and Biomedical Analysis, 66, 91–99. doi:10.1016/j.jpba.2012.03.005
Uchida, N., Lee, J. S., Horst, R. J., Lai, H.-H., Kajita, R., Kakimoto, T., … Torii, K. U. (2012). Regulation of inflorescence architecture by intertissue layer ligand-receptor communication between endodermis and phloem. Proceedings of the National Academy of Sciences of the United States of America, 109(16), 6337–6342. doi:10.1073/pnas.1117537109
Han, H. J., Choi, S. B., Kim, W. B., Lee, J.-S., Boo, Y. J., Song, T. J., … Choi, S. Y. (2012). Surgical stress response and clinical outcomes of single port laparoscopic cholecystectomy: prospective nonrandomized study. The American Surgeon, 78(4), 485–491. doi:10.1177/000313481207800443
Burstein, M. T., Beach, A., Richard, V. R., Koupaki, O., Gomez-Perez, A., Goldberg, A. A., … Titorenko, V. I. (2012). Interspecies chemical signals released into the environment may create xenohormetic, hormetic and cytostatic selective forces that drive the ecosystemic evolution of longevity regulation mechanisms. Dose-Response: A Publication of International Hormesis Society, 10(1), 75–82. doi:10.2203/dose-response.11-011.Titorenko
Kachurina, N., Turcotte, B., & Whiteway, M. (2012). Motor protein Myo5p is required to maintain the regulatory circuit controlling WOR1 expression in Candida albicans. Eukaryotic Cell, 11(5), 626–637. doi:10.1128/EC.00021-12
Yan, L., Côte, P., Li, X.-X., Jiang, Y.-Y., & Whiteway, M. (2012). PalI domain proteins of Saccharomyces cerevisiae and Candida albicans. Microbiological Research, 167(7), 422–432. doi:10.1016/j.micres.2011.12.005
Lee, J. S., Han, H. J., Choi, S. B., Jung, C. W., Song, T. J., & Choi, S. Y. (2012). Surgical outcomes of solid pseudopapillary neoplasm of the pancreas: a single institution’s experience for the last ten years. The American Surgeon, 78(2), 216–219. doi:10.1177/000313481207800241
Shapiro, R. S., Sellam, A., Tebbji, F., Whiteway, M., Nantel, A., & Cowen, L. E. (2012). Pho85, Pcl1, and Hms1 signaling governs Candida albicans morphogenesis induced by high temperature or Hsp90 compromise. Current Biology: CB, 22(6), 461–470. doi:10.1016/j.cub.2012.01.062
Harvey, J., Bergdahl, A., Dadafarin, H., Ling, L., Davis, E. C., & Omanovic, S. (2012). An electrochemical method for functionalization of a 316L stainless steel surface being used as a stent in coronary surgery: irreversible immobilization of fibronectin for the enhancement of endothelial cell attachment. Biotechnology Letters, 34(6), 1159–1165. doi:10.1007/s10529-012-0885-8
Chan, J. N. Y., Vuckovic, D., Sleno, L., Olsen, J. B., Pogoutse, O., Havugimana, P., … Emili, A. (2012). Target identification by chromatographic co-elution: monitoring of drug-protein interactions without immobilization or chemical derivatization. Molecular & Cellular Proteomics: MCP, 11(7), M111.016642. doi:10.1074/mcp.M111.016642
Choi, S. B., Lee, J. S., Kim, W. B., Song, T. J., Suh, S. O., & Choi, S. Y. (2012). Efficacy of the omental roll-up technique in pancreaticojejunostomy as a strategy to prevent pancreatic fistula after pancreaticoduodenectomy. Archives of Surgery (Chicago, Ill.: 1960), 147(2), 145–150. doi:10.1001/archsurg.2011.865
Hoteit, I., Kharma, N., & Varin, L. (2012). Computational simulation of a gene regulatory network implementing an extendable synchronous single-input delay flip-flop. Bio Systems, 109(1), 57–71. doi:10.1016/j.biosystems.2012.01.004

2011

Burstein, M. T., Beach, A., Richard, V. R., Koupaki, O., Gomez-Perez, A., Goldberg, A. A., … Titorenko, V. I. (2012). Interspecies chemical signals released into the environment may create xenohormetic, hormetic and cytostatic selective forces that drive the ecosystemic evolution of longevity regulation mechanisms. Dose-Response: A Publication of International Hormesis Society, 10(1), 75–82. doi:10.2203/dose-response.11-011.Titorenko
Usher, J., Balderas-Hernandez, V., Quon, P., Gold, N. D., Martin, V. J. J., Mahadevan, R., & Baetz, K. (2011). Chemical and synthetic genetic array analysis identifies genes that suppress xylose utilization and fermentation in Saccharomyces cerevisiae. G3 (Bethesda, Md.), 1(4), 247–258. doi:10.1534/g3.111.000695
Facchini, P. J., Bohlmann, J., Covello, P. S., De Luca, V., Mahadevan, R., Page, J. E., … Martin, V. J. J. (2012). Synthetic biosystems for the production of high-value plant metabolites. Trends in Biotechnology, 30(3), 127–131. doi:10.1016/j.tibtech.2011.10.001
Kornblatt, M. J., Kornblatt, J. A., & Hancock, M. A. (2011). The interaction of canine plasminogen with Streptococcus pyogenes enolase: they bind to one another but what is the nature of the structures involved? PloS One, 6(12), e28481. doi:10.1371/journal.pone.0028481
Mogilevsky, K., Glory, A., & Bachewich, C. (2012). The Polo-like kinase PLKA in Aspergillus nidulans is not essential but plays important roles during vegetative growth and development. Eukaryotic Cell, 11(2), 194–205. doi:10.1128/EC.05130-11
Bojko, B., Vuckovic, D., Cudjoe, E., Hoque, M. E., Mirnaghi, F., Wąsowicz, M., … Pawliszyn, J. (2011). Determination of tranexamic acid concentration by solid phase microextraction and liquid chromatography-tandem mass spectrometry: first step to in vivo analysis. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences, 879(32), 3781–3787. doi:10.1016/j.jchromb.2011.08.003
Han, H. J., Choi, S. B., Lee, J. S., Kim, W. B., Song, T. J., Suh, S.-O., … Choi, S.-Y. (2011). Reliability of continuous suture of pancreaticojejunostomy after pancreaticoduodenectomy. Hepato-Gastroenterology, 58(112), 2132–2139. doi:10.5754/hge10314
Suri, S., & Walsh, D. A. (2012). Osteochondral alterations in osteoarthritis. Bone, 51(2), 204–211. doi:10.1016/j.bone.2011.10.010
Walsh, D. A., & Chapman, V. (2011). [Review of Bisphosphonates for osteoarthritis]. Arthritis research & therapy, 13(5), 128. doi:10.1186/ar3448
Goldberg, A. A., Beach, A., Davies, G. F., Harkness, T. A. A., Leblanc, A., & Titorenko, V. I. (2011). Lithocholic bile acid selectively kills neuroblastoma cells, while sparing normal neuronal cells. Oncotarget, 2(10), 761–782. doi:10.18632/oncotarget.338
Cluis, C. P., Ekins, A., Narcross, L., Jiang, H., Gold, N. D., Burja, A. M., & Martin, V. J. J. (2011). Identification of bottlenecks in Escherichia coli engineered for the production of CoQ(10). Metabolic Engineering, 13(6), 733–744. doi:10.1016/j.ymben.2011.09.009
Pool, M., Rambaldi, I., Darlington, P. J., Wright, M. C., Fournier, A. E., & Bar-Or, A. (2012). Neurite outgrowth is differentially impacted by distinct immune cell subsets. Molecular and Cellular Neurosciences, 49(1), 68–76. doi:10.1016/j.mcn.2011.09.004
Berka, R. M., Grigoriev, I. V., Otillar, R., Salamov, A., Grimwood, J., Reid, I., … Tsang, A. (2011). Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris. Nature Biotechnology, 29(10), 922–927. doi:10.1038/nbt.1976
Tsang, A., Stobbe, R. W., & Beaulieu, C. (2012). Triple-quantum-filtered sodium imaging of the human brain at 4.7 T. Magnetic Resonance in Medicine, 67(6), 1633–1643. doi:10.1002/mrm.23147
Moheb, A., Ibrahim, R. K., Roy, R., & Sarhan, F. (2011). Changes in wheat leaf phenolome in response to cold acclimation. Phytochemistry, 72(18), 2294–2307. doi:10.1016/j.phytochem.2011.08.021
Tindell, A. G., Kelso, E. B., Ferrell, W. R., Lockhart, J. C., Walsh, D. A., Dunning, L., & McInnes, I. B. (2012). Correlation of protease-activated receptor-2 expression and synovitis in rheumatoid and osteoarthritis. Rheumatology International, 32(10), 3077–3086. doi:10.1007/s00296-011-2102-9
Canam, T., Town, J. R., Tsang, A., McAllister, T. A., & Dumonceaux, T. J. (2011). Biological pretreatment with a cellobiose dehydrogenase-deficient strain of Trametes versicolor enhances the biofuel potential of canola straw. Bioresource Technology, 102(21), 10020–10027. doi:10.1016/j.biortech.2011.08.045
Bajwa, P. K., Phaenark, C., Grant, N., Zhang, X., Paice, M., Martin, V. J. J., … Lee, H. (2011). Ethanol production from selected lignocellulosic hydrolysates by genome shuffled strains of Scheffersomyces stipitis. Bioresource Technology, 102(21), 9965–9969. doi:10.1016/j.biortech.2011.08.027
Choi, S. B., Hong, K. D., Lee, J. S., Han, H. J., Kim, W. B., Song, T. J., … Choi, S. Y. (2011). Management of umbilical hernia complicated with liver cirrhosis: an advocate of early and elective herniorrhaphy. Digestive and Liver Disease: Official Journal of the Italian Society of Gastroenterology and the Italian Association for the Study of the Liver, 43(12), 991–995. doi:10.1016/j.dld.2011.07.015
Darlington, P. J., Boivin, M.-N., & Bar-Or, A. (2011). Harnessing the therapeutic potential of mesenchymal stem cells in multiple sclerosis. Expert Review of Neurotherapeutics, 11(9), 1295–1303. doi:10.1586/ern.11.113
Beach, A., & Titorenko, V. I. (2011). In search of housekeeping pathways that regulate longevity. Cell Cycle (Georgetown, Tex.), 10(18), 3042–3044. doi:10.4161/cc.10.18.16947
Whiteway, M. (2011). [Review of Yeast mating: trying out new pickup lines]. Current biology: CB, 21(16), R626-8. doi:10.1016/j.cub.2011.06.060
Abdolhosseini, M., Sotsky, J. B., Shelar, A. P., Joyce, P. B. M., & Gorr, S.-U. (2012). Human parotid secretory protein is a lipopolysaccharide-binding protein: identification of an anti-inflammatory peptide domain. Molecular and Cellular Biochemistry, 359(1–2), 1–8. doi:10.1007/s11010-011-0991-2
Duarte, D. T., Hul, S., & Sacher, M. (2011). A yeast two hybrid screen identifies SPATA4 as a TRAPP interactor. FEBS Letters, 585(17), 2676–2681. doi:10.1016/j.febslet.2011.07.040
Kim, J.-W., Kim, K. S., Lee, J.-S., Park, S. M., Cho, H.-Y., Park, J. C., & Kim, J. S. (2011). Two-stage pretreatment of rice straw using aqueous ammonia and dilute acid. Bioresource Technology, 102(19), 8992–8999. doi:10.1016/j.biortech.2011.06.068
Kwan, D. H., & Schulz, F. (2011). The stereochemistry of complex polyketide biosynthesis by modular polyketide synthases. Molecules (Basel, Switzerland), 16(7), 6092–6115. doi:10.3390/molecules16076092
Nyirenda, M. H., Sanvito, L., Darlington, P. J., O’Brien, K., Zhang, G.-X., Constantinescu, C. S., … Gran, B. (2011). TLR2 stimulation drives human naive and effector regulatory T cells into a Th17-like phenotype with reduced suppressive function. The Journal of Immunology, 187(5), 2278–2290. doi:10.4049/jimmunol.1003715
Khalil, H. B., Wang, Z., Wright, J. A., Ralevski, A., Donayo, A. O., & Gulick, P. J. (2011). Heterotrimeric Gα subunit from wheat (Triticum aestivum), GA3, interacts with the calcium-binding protein, Clo3, and the phosphoinositide-specific phospholipase C, PI-PLC1. Plant Molecular Biology, 77(1–2), 145–158. doi:10.1007/s11103-011-9801-1
Tambor, J. H., Ren, H., Ushinsky, S., Zheng, Y., Riemens, A., St-Francois, C., … Storms, R. (2012). Recombinant expression, activity screening and functional characterization identifies three novel endo-1,4-β-glucanases that efficiently hydrolyse cellulosic substrates. Applied Microbiology and Biotechnology, 93(1), 203–214. doi:10.1007/s00253-011-3419-8
Sacher, M. (2011). This article contains supplemental information… or not. Cellular Logistics, 1(1), 4–5. doi:10.4161/cl.1.1.14274
Vuckovic, D. (2011). In vivo solid-phase microextraction sampling: a promising future. Bioanalysis, 3(12), 1305–1308. doi:10.4155/bio.11.109
Bergmame, L., Huffman, J., Cole, R., Dayanandan, S., Tkach, V., & McLaughlin, J. D. (2011). Sphaeridiotrema globulus and Sphaeridiotrema pseudoglobulus (Digenea): species differentiation based on mtDNA (Barcode) and partial LSU-rDNA sequences. The Journal of Parasitology, 97(6), 1132–1136. doi:10.1645/GE-2370.1
Qi, M., Wang, P., O’Toole, N., Barboza, P. S., Ungerfeld, E., Leigh, M. B., … Forster, R. J. (2011). Snapshot of the eukaryotic gene expression in muskoxen rumen--a metatranscriptomic approach. PloS One, 6(5), e20521. doi:10.1371/journal.pone.0020521
Lord, H. L., Zhang, X., Musteata, F. M., Vuckovic, D., & Pawliszyn, J. (2011). In vivo solid-phase microextraction for monitoring intravenous concentrations of drugs and metabolites. Nature Protocols, 6(6), 896–924. doi:10.1038/nprot.2011.329
Pinel, D., D’Aoust, F., del Cardayre, S. B., Bajwa, P. K., Lee, H., & Martin, V. J. J. (2011). Saccharomyces cerevisiae genome shuffling through recursive population mating leads to improved tolerance to spent sulfite liquor. Applied and Environmental Microbiology, 77(14), 4736–4743. doi:10.1128/AEM.02769-10
Murphy, C., Powlowski, J., Wu, M., Butler, G., & Tsang, A. (2011). Curation of characterized glycoside hydrolases of fungal origin. Database: The Journal of Biological Databases and Curation, 2011(0), bar020. doi:10.1093/database/bar020
Vuckovic, D., Risticevic, S., & Pawliszyn, J. (2011). In vivo solid-phase microextraction in metabolomics: opportunities for the direct investigation of biological systems. Angewandte Chemie (International Ed. in English), 50(25), 5618–5628. doi:10.1002/anie.201006896
Magtanong, L., Ho, C. H., Barker, S. L., Jiao, W., Baryshnikova, A., Bahr, S., … Boone, C. (2011). Dosage suppression genetic interaction networks enhance functional wiring diagrams of the cell. Nature Biotechnology, 29(6), 505–511. doi:10.1038/nbt.1855
Andersen, M. R., Salazar, M. P., Schaap, P. J., van de Vondervoort, P. J. I., Culley, D., Thykaer, J., … Baker, S. E. (2011). Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88. Genome Research, 21(6), 885–897. doi:10.1101/gr.112169.110
Ashraf, S., Mapp, P. I., & Walsh, D. A. (2011). Contributions of angiogenesis to inflammation, joint damage, and pain in a rat model of osteoarthritis. Arthritis and Rheumatism, 63(9), 2700–2710. doi:10.1002/art.30422
Scrivens, P. J., Noueihed, B., Shahrzad, N., Hul, S., Brunet, S., & Sacher, M. (2011). C4orf41 and TTC-15 are mammalian TRAPP components with a role at an early stage in ER-to-Golgi trafficking. Molecular Biology of the Cell, 22(12), 2083–2093. doi:10.1091/mbc.E10-11-0873
Susanto, D., English, A. M., Sharma, R., & Kwong, E. (2011). ESI-MS quantitation of iron as its 4-(2-pyridylazo)resorcinol (PAR) complex: application to pharmaceutical tablets containing iron oxide pigment. Journal of Mass Spectrometry, 46(5), 508–516. doi:10.1002/jms.1919
Vuckovic, D., de Lannoy, I., Gien, B., Shirey, R. E., Sidisky, L. M., Dutta, S., & Pawliszyn, J. (2011). In vivo solid-phase microextraction: capturing the elusive portion of metabolome. Angewandte Chemie (International Ed. in English), 50(23), 5344–5348. doi:10.1002/anie.201006715
Han, H. J., Choi, S. B., Park, M. S., Lee, J. S., Kim, W. B., Song, T. J., & Choi, S. Y. (2011). Learning curve of single port laparoscopic cholecystectomy determined using the non-linear ordinary least squares method based on a non-linear regression model: An analysis of 150 consecutive patients. Journal of Hepato-Biliary-Pancreatic Sciences, 18(4), 510–515. doi:10.1007/s00534-011-0386-5
Uniacke, J., Colón-Ramos, D., & Zerges, W. (2011). FISH and immunofluorescence staining in Chlamydomonas. Methods in Molecular Biology (Clifton, N.J.), 714, 15–29. doi:10.1007/978-1-61779-005-8_2
Wilds, C. J., Booth, J. D. M., & Noronha, A. M. (2011). Synthesis of building blocks and oligonucleotides with {G}O<sup>6</sup>-alkyl-O<sup>6</sup>{G} cross-links. Et al [Current Protocols in Nucleic Acid Chemistry], Chapter 5(1), Unit5.9. doi:10.1002/0471142700.nc0509s44
Chou, H., Glory, A., & Bachewich, C. (2011). Orthologues of the anaphase-promoting complex/cyclosome coactivators Cdc20p and Cdh1p are important for mitotic progression and morphogenesis in Candida albicans. Eukaryotic Cell, 10(5), 696–709. doi:10.1128/EC.00263-10
Moran, E. E., Timerghazin, Q. K., Kwong, E., & English, A. M. (2011). Kinetics and mechanism of S-nitrosothiol acid-catalyzed hydrolysis: sulfur activation promotes facile NO+ release. The Journal of Physical Chemistry. B, 115(12), 3112–3126. doi:10.1021/jp1035597
Kwan, D. H., Tosin, M., Schläger, N., Schulz, F., & Leadlay, P. F. (2011). Insights into the stereospecificity of ketoreduction in a modular polyketide synthase. Organic & Biomolecular Chemistry, 9(7), 2053–2056. doi:10.1039/c1ob00022e
Vuckovic, D., & Pawliszyn, J. (2011). Systematic evaluation of solid-phase microextraction coatings for untargeted metabolomic profiling of biological fluids by liquid chromatography-mass spectrometry. Analytical Chemistry, 83(6), 1944–1954. doi:10.1021/ac102614v

2010

Bajwa PK, Pinel D, Martin VJ, Trevors JT and Lee H (2010). Strain improvement of the pentose-fermenting yeast Pichia stipitis by genome shuffling. J Microbiol Methods 81 (2): 179-86.
Garcia JI, Seabra AB, Kennedy R, English AM. (2010) Nitrite and nitroglycerin induce rapid release of the vasodilator ATP from erythrocytes: Relevance to the chemical physiology of local vasodilation. J Inorg Biochem. 104 (3): 289-96.
Locke SA, McLaughlin JD, Dayanandan S and Marcogliese DJ. (2010) Diversity and specificity in Diplostomum spp. metacercariae in freshwater fishes revealed by cytochrome c oxidase I and internal transcribed spacer sequences. Int J Parasitol. 40 (3): 333-43..

2009

Bajwa PK, Shireen T, D'Aoust F, Pinel D, Martin VJ, Trevors JT, Lee H. (2009) Mutants of the pentose-fermenting yeast Pichia stipitis with improved tolerance to inhibitors in hardwood spent sulfite liquor. Biotechnol Bioeng. 104 (5): 892-900.
Goldberg AA, Bourque SD, Kyryakov P, Gregg C, Boukh-Viner T, Beach A, Burstein MT, Machkalyan G, Richard V, Rampersad S, Cyr D, Milijevic S, Titorenko VI. (2009) Effect of calorie restriction on the metabolic history of chronologically aging yeast. Exp Gerontol. 44 (9): 555-71.
Goldberg AA, Bourque SD, Kyryakov P, Boukh-Viner T, Gregg C, Beach A, Burstein MT, Machkalyan G, Richard V, Rampersad S and Titorenko VI. (2009) A novel function of lipid droplets in regulating longevity. Biochem. Soc. Trans. 37 (5): 1050-1055.
Goldberg A and Titorenko VI. Peroxisomes and dimorphic transition in the yeast Yarrowia lipolytica. In: Emergent Functions of the Peroxisome. Eds. Titorenko, V.I. and Terlecky, S.R. Research Signpost, Kerala, India, pp. 87-96 (2009).
Khalil S, Pawelek PD. (2009) Ligand-Induced Conformational Rearrangements Promote Interaction between the Escherichia coli Enterobactin Biosynthetic Proteins EntE and EntB. J Mol Biol. 393: 658-671.
Kornblatt JA. (2009) Reduction of canine plasminogen leads to an expanded molecule which precipitates. PLoS One. 4 (7): e6196.
Powlowski J, Mahajan S, Schapira M, Master ER. (2009) Substrate recognition and hydrolysis by a fungal xyloglucan-specific family 12 hydrolase. Carbohydr Res. 344 (10): 1175-9.
Scrivens PJ, Shahrzad N, Moores A, Morin A, Brunet S and Sacher M. (2009) TRAPPC2L is a novel, highly conserved TRAPP-interacting protein. Traffic 10: 724-736
Tsang A, Butler G, Powlowski J, Panisko EA, Baker SE. (2009) Analytical and computational approaches to define the Aspergillus niger secretome. Fungal Genet Biol. 46 Suppl 1: S153-S160.
Terlecky, S.R. and Titorenko, V.I. (editors). Emergent Functions of the Peroxisome. Research Signpost, Kerala, India, 135 pages (2009).
Terlecky, S.R. and Titorenko, V.I. New roles for the peroxisome in cell development, differentiation, morphogenesis, and aging. In: Emergent Functions of the Peroxisome. Eds. Titorenko, V.I. and Terlecky, S.R. Research Signpost, Kerala, India, pp. 1-5 (2009).
Titorenko VI, Rachubinski RA. (2009) Spatiotemporal dynamics of the ER-derived peroxisomal endomembrane system. Int Rev Cell Mol Biol. 272: 191-244.
Uniacke J, Zerges W. (2009) Chloroplast protein targeting involves localized translation in Chlamydomonas. Proc Natl Acad Sci U S A. 106 (5): 1439-44.
Zhou JM, Seo YW, Ibrahim RK. (2009) Biochemical characterization of a putative wheat caffeic acid O-methyltransferase.Plant Physiol Biochem. 47(4): 322-6.

2008

Butler G, Ding W, Longo J, Min XJ, O'Toole N, Pillai S, Shu R, Sun J, Yang Y, Xie Q, Benech R, Spurmanis A, Ulycznyj P, Powlowski J, Storms R and Tsang A. (2008). Data management for fungal genomics: an experience report. In: Biological Database Modeling, J. Chen and A. S. Sidhu (eds). Artech House Publishers (Norwood, Massachusetts), pp 103-118.
Chakkalakal JV, Miura P, Belanger G, Michel RN and Jasmin BJ. (2008) Modulation of utrophin A mRNA stability in fast versus slow muscles via an AU-rich element and calcineurin signaling. Nucleic Acids Res 36: 826-838.
Clark J, English AM, Hansen JC, Francisco JS. (2008) Computational study on the existence of organic peroxy radical-water complexes (RO2.H2O). J Phys Chem A. 112 (7):1587-95.
Dryanova A, Zakharov A and Gulick PJ. (2008) Data mining for miRNAs and their targets in the Triticeae. Genome 51: 433-443.
English AM, Hansen JC, Szente JJ, Maricq MM. (2008) The effects of water vapor on the CH3O2 self-reaction and reaction with HO2. J Phys Chem A. 112 (39): 9220-8.
Hickey DA. (2008) Highly similar noncoding genomic DNA sequences: ultraconserved, or merely widespread? Genome 51: 396-397.
Kermany AR, Zhou X and Hickey DA. (2008) Joint stationary moments of a two-island diffusion model of population subdivision. Theor Popul Biol. 74(3): 226-32.
Kornblatt JA, Zhou J-M and Ibrahim, RK. (2008) Structure-activity relationships of wheat flavone O-methyltransferase - a homodimer of convenience. FEBS J 275: 2255-2266.
Lei Y, Pawelek PD and Powlowski J. (2008) A shared binding site for NAD+ and coenzyme A in an acetaldehyde dehydrogenase involved in bacterial degradation of aromatic compounds. Biochemistry 47: 6870-6882.
Master ER, Agar NY, Gómez-Gil L, Powlowski JB, Mohn WW and Eltis LD. (2008) Biphenyl dioxygenase from an arctic isolate is not cold adapted. Appl Environ Microbiol. 74: 3908-3911.
Master ER, Zheng Y, Storms R, Tsang A and Powlowski J. (2008) A xyloglucan-specific family 12 glycosyl hydrolase from Aspergillus niger: recombinant expression, purification and characterization. Biochem J. 411: 161-170.
Meusnier I, Singer GA, Landry JF, Hickey DA, Hebert PD, Hajibabaei M. (2008) A universal DNA mini-barcode for biodiversity analysis. BMC Genomics 9: 214.
Min XJ, Hickey DA. An evolutionary footprint of age-related natural selection in mitochondrial DNA (2008). J Mol Evol. 67 (4): 412-7.
Sacher M, Kim Y-G, Lavie A, Oh B-H and Segev N. (2008) The TRAPP complex: insights into its architecture and functionTraffic 9: 2032-2042.
Shan X, Russell TA, Paul SM, Kushner DB and Joyce PBM. (2008) Characterization of a temperature-sensitive mutation that impairs the function of yeast tRNA nucleotidyltransferase. Yeast 25: 219-233.
Simon DF, Descombes P, Zerges W and Wilkinson KJ. (2008) Global expression pofiling of Chlamydomonas reinhardtii exposed to trace levels of free cadmium. Environ Toxicol Chem 27: 1668-1675.
Timerghazin QK, Peslherbe GH and English AM. (2008) Structure and stability of HSNO, the simplest S-nitrosothiol. Phys Chem Chem Phys 10: 1532-1539.
Timerghazin QK, English AM and Peslherbe GH. (2008) On the Multireference Character of S-Nitrosothiols. Chem Phys Letts 454: 24-29.
Uniacke J and Zerges W. (2008) Stress induces the assembly of RNA granules in the chloroplast of Chlamydomonas reinhardtii. Journal of Cell Biology 182: 641-646.
Zhao S, Choy BS, Kornblatt MJ (2008) Effects of the G376E and G157D mutations on the stability of yeast enolase--a model for human muscle enolase deficiency. FEBS J. 275(1):97-106.
Zhou J-M, Fukushi Y, Wollenweber E, Ibrahim RK. (2008) Characterization of two O-methyltransferase-like genes in barley and maize. Pharmaceut Biol 46: 26-34.

2007

Cluis CP, Burja AM and Martin VJJ. (2007) Current prospects for the metabolic engineering of ubiquinone-10 in microbes.Trends Biotechnol 25: 481-534.
Gold ND and Martin VJJ. (2007) Global view of the Clostridium thermocellum cellulosome revealed by quantitative proteomic analysis. J Bacteriol 189: 6787-6795.
Guo T, Gregg C, Boukh-Viner T, Kyryakov P, Goldberg A, Bourque S, Banu F, Haile S, Milijevic S, San KH, Solomon J, Wong V and Titorenko VI. (2007) A signal from inside the peroxisome initiates its division by promoting the remodeling of the peroxisomal membrane. J Cell Biol. 177(2): 289-303.
Hajibabaei M, Singer GA, Hebert PD and Hickey DA. (2007) DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics. Trends Genet. 23(4): 167-72.
Kiel JA, Titorenko VI, van der Klei IJ and Veenhuis M. (2007) Overproduction of translation elongation factor 1-alpha (eEF1A) suppresses the peroxisome biogenesis defect in a Hansenula polymorpha pex3 mutant via translational read-through. FEMS Yeast Res. 7(7): 1114-25.
Kornblatt JA, Barretto T, Chigogidze K and Chirwa B. (2007) Canine plasminogen: Spectral responses to changes in 6-aminohexanoate and temperature. Analytical Chemistry Insights 2: 17-29.
Lahjouji K, Storms R, Xiao Z, Joung KB, Zheng Y, Powlowski J, Tsang A and Varin L. (2007) Biochemical and molecular characterization of a cellobiohydrolase from Trametes versicolor. Appl Microbiol Biotechnol 75(2): 337-46.
Lam K, Ibrahim RK, Behdad BB and Dayanandan S. (2007) Structure-Function and Evolution of Plant O-Methyltransferases.Genome 50: 1001-1015.
Laterreur J and English AM. (2007) Hemoglobin S-nitrosation on Oxygneation of Nitrite Deoxyhemoglobin Incubations is Attenuated by Methemoglobin. J Inorg Biochem 101: 1827–1835.
Michel RN, Chin ER, Chakkalakal JV, Eibl JK and Jasmin BJ (2007) Invited review: Ca2+/Calmodulin-based signalling in the regulation of the muscle fibre phenotype and its therapeutic potential via modulation of utrophin A and myostatin expression.Appl Physiol Nutr Me 32: 921-929.
Marsolais F, Boyd J, Paredes Y, Schinas AM, Garcia M, Elzein S and Varin L. (2007) Molecular and biochemical characterization of two brassinosteroid sulfotransferases from Arabidopsis, AtST4a (At2g14920) and AtST1 (At2g03760).Planta 225(5): 1233-44.
Min XJ and Hickey DA. (2007) DNA barcodes provide a quick preview of mitochondrial genome composition. PLoS ONE 2: e325.
Min XJ and Hickey DA. (2007) DNA asymmetric strand bias affects the amino acid composition of mitochondrial proteins.DNA Res 14: 201-6.
Min XJ and Hickey DA. (2007) Assessing the effect of varying sequence length on DNA barcoding of fungi. Mol Ecol Notes. 7(3): 365-373.
Monroy AF, Dryanova A, Malette B, Oren DH, Ridha Farajalla M, Liu W, Danyluk J, Ubayasena LW, Kane K, Scoles GJ, Sarhan F and Gulick PJ. (2007) Regulatory gene candidates and gene expression analysis of cold acclimation in winter and spring wheat. Plant Mol Biol 64(4): 409-23.
Mukhopadhyay A, Redding AM, Joachimiak M, Arkin AP, Borglin S, Dehal P, Chakraborty R, Geller JT, Giles B, Hazen TC, He Q, Joyner DC, Martin VJJ, Wall JD, Yang ZK, Zhou J and Keasling JD. (2007) The varied responses of Desulfovibrio vulgaris Hildenborough to low and high oxygen exposure. J Bacteriol 189: 5996-6010.
Pfleger BF, Pitera DJ, Newman JD, Martin VJJ and Keasling JD. (2007) Microbial sensors for small molecules: Development of a mevalonate biosensor. Metab Eng 9: 30-38.
Ridha Farajalla M and Gulick PJ. (2007) The alpha-tubulin gene family in wheat (Triticum aestivum L.) and differential gene expression during cold acclimation. Genome 50(5): 502-510.
Roy JF, Chretien MN, Woodside B and English AM. (2007) Reduction and S-nitrosation of the neuropeptide oxytocin: Implications for its biological function. Nitric Oxide 17(2): 82-90.
Schmidt von Braun S, Sabetti A, Hanic-Joyce PJ, Gu J, Schleiff E and Joyce PBM. (2007) Dual targeting of the tRNA nucleotidyltransferase in plants: not just the signal. J. Exp. Bot. 58: 4083-4093.
Tardif G, Kane NA, Adam H, Labrie L, Major G, Gulick P, Sarhan F and Laliberte JF. (2007) Interaction network of proteins associated with abiotic stress response and development in wheat. Plant Mol Biol. 63(5): 703-18.
Timerghazin QK, Peslherbe GH and English AM. (2007) Resonance description of S-nitrosothiols: insights into reactivity. Org Lett. 9(16): 3049-52.
Uniacke J and Zerges W. (2007) Photosystem II assembly and repair are differentially localized in Chlamydomonas. Plant Cell19: 3640-3654.
Wang HC and Hickey DA. (2007) Rapid divergence of codon usage patterns within the rice genome. BMC Evol Biol. 7 Suppl 1: S6.
Whiteway M and Bachewich C. (2007) Morphogenesis in Candida albicans. Annu Rev Microbiol. 61: 529-53.
Xu D, Jiang B, Ketela T, Lemieux S, Veillette K, Martel N, Davison J, Sillaots S, Trosok S, Bachewich C, Bussey H, Youngman P and Roemer T. (2007) Genome-wide fitness test and mechanism-of-action studies of inhibitory compounds in Candida albicans. PLoS Pathog. 3(6): e92.
Zajickova K, Vrbikova J, Canaff L, Pawelek PD, Goltzman D and Hendy GN (2007) Identification and Functional Characterization of a Novel Mutation in the Calcium-Sensing Receptor Gene in Familial Hypocalciuric Hypercalcemia: Modulation of Clinical Severity by Vitamin D Status. J Clin Endocr Metab 92: 2616-2623.

2006

Baker C, Shaban-Nejad A, Su X, Haarslev V and Butler G. (2006) Semantic web infrastructure for fungal enzyme biotechnologists. J. Web Sem. 4(3): 168-180.
Benkel B, Kollers S, Fries R, Sazanov A, Yoshida E, Valle E, Davoren J and Hickey D. (2006) Characterization of the bovine ampkgamma1 gene. Mamm Genome 16: 194-200.
Bonvin J, Aponte RA, Marcantonio M, Singh S, Christendat D and Turnbull JL. (2006) Biochemical characterization of prephenate dehydrogenase from the hyperthermophilic bacterium Aquifex aeolicus. Protein Sci. 15(6): 1417-32.
Boukh-Viner T and Titorenko VI. (2006) Lipids and lipid domains in the peroxisomal membrane of the yeast Yarrowia lipolytica.Biochim Biophys Acta 1763(12): 1688-96.
Carter DM, Miousse IR, Gagnon J-N, Martinez E, Clements A, Lee J, Hancock MA, Gagnon H, Pawelek PD and Coulton JW (2006) Interactions Between TonB from Escherichia coli and the Periplasmic Protein FhuD. J Biol Chem 281: 35413-35424.
Couture MMJ, Martin VJJ, Mohn WW and Eltis LD. (2006) Characterization of DitA3, the [Fe3S4] ferredoxin of an aromatic ring-hydroxylating dioxygenase from a diterpenoid-degrading microorganism. BBA-Proteins Proteom 1764: 1462-1469.
Chakkalakal JV, Michel SA, Chin ER, Michel RN and Jasmin BJ. (2006) Targeted inhibition of Ca+2/calmodulin signaling exacerbates the dystrophic phenotype in mdx mouse muscle. Human Molecular Genetics 15(9): 1423-1435.
Gidda SK and Varin L. (2006) Biochemical and molecular characterization of flavonoid 7-sulfotransferase from Arabidopsis thaliana. Plant Physiol Biochem. 44(11-12): 628-36.
Hajibabaei M, Singer GA and Hickey DA. (2006) Benchmarking DNA barcodes: An assessment using available primate sequences. Genome 49: 851-854.
Hamzeh M, Périnet P and Dayanandan S. (2006) Genetic Relationships among species of Populus (Salicaceae) based on nuclear genomic data. Journal of the Torrey Botanical Society 133(4): 519-527.
Houde M, Belcaid M, Ouellet F, Danyluk J, Monroy AF, Dryanova A, Gulick P, Bergeron A, Laroche A, Links MG, MacCarthy L, Crosby WL and Sarhan F. (2006) Wheat EST resources for functional genomics of abiotic stress. BMC Genomics 7: 149.
Jiang H and English AM. (2006) Evaluation of D10-Leu metabolic labeling coupled with MALDI-MS analysis in studying the response of the yeast proteome to H2O2 challenge. J Proteome Res. 5(10): 2539-46.
Jiang H and English AM. (2006) Phenotypic analysis of the ccp1Delta and ccp1Delta-ccp1W191F mutant strains of Saccharomyces cerevisiae indicates that cytochrome c peroxidase functions in oxidative-stress signaling. J Inorg Biochem. 100(12): 1996-2008.
MacWilliams H, Doquang K, Pedrola R, Dollman G, Grassi D, Peis T, Tsang A and Ceccarelli A. (2006) A retinoblastoma ortholog controls stalk/spore preference in Dictyostelium. Development 133(7): 1287-97.
O’Toole N, Min X-J, Butler G, Storms R and Tsang A. (2006) Sequence-based analysis of fungal secretomes. Applied Mycology and Biotechnology 6: 277-296.
Semova N, Storms R, John T, Gaudet P, Ulycznyj P, Min X-J, Sun J, Butler G and Tsang A. (2006) Generation, annotation, and analysis of an extensive Aspergillus niger EST collection. BMC Microbiology 6: 7.
Shen B, Scaiano JC and English AM. (2006) Zeolite encapsulation decreases TiO2-photosensitized ROS generation in cultured human skin fibroblasts. Photochem Photobiol. 82(1): 5-12.
Sun W, Singh S, Zhang R, Turnbull JL and Christendat D. (2006) Crystal structure of prephenate dehydrogenase from Aquifex aeolicus. Insights into the catalytic mechanism. J Biol Chem. 281(18): 12919-28.
Titorenko VI and Mullen RT. (2006) Peroxisome biogenesis: the peroxisomal endomembrane system and the role of the ER. J Cell Biol. 174(1): 11-7.
Tsang A, Semova N, Daigneault K, O'Toole N, Benech R-O, Butler G, Storms R, Powlowski J, Wenzel T, van Rooijen R, Riemens A and Meima R. (2006) Genome-wide approach to identify and characterize fungal extracellular proteins.Scandinavian Journal of Food & Nutrition 50 (S1): 6-8.
Wang HC, Xia X and Hickey D. (2006) Thermal adaptation of the small subunit ribosomal RNA gene: a comparative study. J Mol Evol. 63: 120-126.
Xia X, Wang H, Xie Z, Carullo M, Huang H and Hickey D. (2006) Cytosine usage modulates the correlation between CDS length and CG content in prokaryotic genomes. Mol Biol Evol. 23: 1450-1454.
Xiao Z, Storms R and Tsang A. (2006) A quantitative starch-iodine method for measuring alpha-amylase and glucoamylase activities. Anal Biochem. 351(1):146-8. Erratum in: Anal Biochem. 2007 362 (1): 154.
Ye M and English AM. (2006) Binding of polyaminocarboxylate chelators to the active-site copper inhibits the GSNO-reductase activity but not the superoxide dismutase activity of Cu,Zn-superoxide dismutase. Biochemistry 45 (42): 12723-32.
Yoshikuni Y, Martin VJJ, Ferrin TE and Keasling JD. (2006) Engineering cotton (+)-d-cadinene synthase to an altered function: Germacrene D-4-ol synthase. Chem Biol 13: 91-98.
Zhou JM, Gold ND, Martin VJ, Wollenweber E and Ibrahim RK. (2006) Sequential O-methylation of tricetin is catalyzed by one gene product in wheat leaves. BBA-Gen Subjects 1760: 989-1150.
Zhou JM, Gold ND, Martin VJ, Wollenweber E and Ibrahim RK. (2006) Sequential O-methylation of tricetin by a single gene product in wheat. Biochim Biophys Acta 1760(7): 1115-24.
Zhou JM, Fukushi Y, Wang XF and Ibrahim RK. (2006) Characterization of a novel O-methyltransferase gene in rice. Nat Prod Commun 1: 981-984.

2005

Bard H, English AM, Gagnon C and Bellemin K. (2005) The effect of adult hemoglobin on red blood cell nitric oxide levels during fetal development. Biol. Neonate 87(3): 203-6.
Benkel BF, Nguyen T, Uno Y, Ponce de Leon FA and Hickey DA. (2005) Structural organization and chromosomal location of the chicken alpha-amylase gene family. Gene 362: 117-124.
Boukh-Viner T, Guo T, Alexandrian A, Cerracchio A, Gregg C, Haile S, Kyskan R, Milijevic S, Oren D, Solomon J, Wong V, Nicaud JM, Rachubinski RA, English AM and Titorenko VI. (2005) Dynamic ergosterol- and ceramide-rich domains in the peroxisomal membrane serve as an organizing platform for peroxisome fusion. J. Cell Biol. 168: 761-773.
Boys J, Cherry M and Dayanandan S. (2005) Microsatellite analysis reveals genetically distinct populations of red pine (Pinus resinosa: Pinaceae). American Journal of Botany 92: 833-841.
Carter DM and Kornblatt JA. (2005) Interactions between canine plasminogen and 8-anilino-1-naphthalene sulfonate: structural insights from a fluorescent probe. Cellular and Molecular Biology 51: OL755-OL765.
Devanathan G, Turnbull JL, Ziomek E, Purisima EO, Menard R and Sulea T. (2005) Carboxy-monopeptidase substrate specificity of human cathepsin X. Biochem Biophys Res Commun. 329(2): 445-52.
Gregg C, Guo T, Boukh-Viner T, Alexandrian A, Banu F, Cerracchio A, Haile S, Makoroka L, Milijevic S, Sison C, Solomon J, Wong V, Nicaud JM, Rachubinski RA, English AM and Titorenko VI. (2005) Molecular mechanism for the coordination of organelle growth and division. Biochem. Cell Biol. 83: 779.
Gulick PJ, Drouin S, Yu Z, Danyluk J, Poisson G, Monroy AF and Sarhan F. (2005) Genotypic Comparison of Low Temperature Responsive Genes in Winter and Spring Wheat Using Microarray Analysis. Genome 48: 913-923.
Ibrahim R.K. (2005) A forty-year journey in plant research: original contributions to flavonoid biochemistry. Can J Bot 83: 433-450.
Kornblatt JA and Schuck P. (2005) The influence of temperature on the conformation of canine plasminogen: an analytical ultracentrifugation and dynamic light scattering study. Biochemistry 44: 13122-13131.
Min XJ, Butler G, Storms R and Tsang A. (2005) OrfPredictor: predicting protein-coding regions in EST-derived sequences.Nucleic Acids Res. 33 (Web Server issue): W677-80.
Min XJ, Butler G, Storms R and Tsang A. (2005) TargetIdentifier: a webserver for identifying full-length cDNAs from EST sequences. Nucleic Acids Res. 33 (Web Server issue): W669-72.
Shen B and English AM. (2005) Mass spectrometric analysis of nitroxyl-mediated protein modification: comparison of products formed with free and protein-based cysteines. Biochemistry 44 (42): 14030-44.
Storms R, Zheng Y, Li H, Sillaots S, Martinez-Perez A and Tsang A. (2005) Plasmid vectors for protein production, gene expression and molecular manipulations in Aspergillus niger. Plasmid 53 (3): 191-204.
Xiao Z, Storms R and Tsang A. (2005) Microplate-based carboxymethylcellulose assay for endoglucanase activity. Anal. Biochem. 342 (1): 176-8.
Williams BA and Tsang A. (2005) Analysis of multiple classes of abscisic acid-responsive genes during embryogenesis in zea mays. Developmental Genetics 15 (5): 415 - 424.

2004

Anzellotti D and Ibrahim RK. (2004) Molecular characterization and functional expression of flavonol 6-hydroxylase. BMC Plant Biol. 13(4): 20.
Bard H, English AM, Bellemin K and Gagnon C. (2004) Developmental changes in NO bioavailability in fetal erythrocytes.Semin. Perinatol. 28(4): 312-6.
Chirwa NT and Herrington MB. (2004) Role of MetR and PurR in the activation of glyA by CsgD in Escherichia coli K-12. Can. J. Microbiol. 50: 683-690.
Chretien MN, Shen B, Garcia H, English A and Scaiano J. (2004) Ship-in-a-Bottle Synthesis of Fluorescence Labeled Nanoparticles: Applications in Cellular Imaging. Photochem. Photobiol. 80(3): 434-7.
Decelle B, Tsang A and Storms RK. (2004) Cloning, functional expression and characterization of three Phanerochaete chrysosporium endo-1,4-beta-xylanases. Curr. Genet. 46(3): 166-75.
Dickens AF, Gélinas Y, Masiello CA, Wakeham SG and Hedges JI. (2004) Reburial of fossil organic carbon in marine sediments. Nature 427: 336-339.
Dodard SG, Powlowski J and Sunahara GI. (2004) Biotransformation of 2,4,6-trinitrotoluene (TNT) by enchytraeids (Enchytraeus albidus) in vivo and in vitro. Environ. Pollut. 131(2): 263-73.
Hamzeh M and Dayanandan S. (2004) Phylogeny of Populus (Salicaceae) based on nucleotide sequences of chloroplast trnT-trnF region and the nuclear rDNA. American Journal of Botany 91: 1398-1409.
Huang TS, Anzellotti D, Dedaldechamp F and Ibrahim RK. (2004) Partial purification, kinetic analysis, and amino acid sequence information of a flavonol 3-O-methyltransferase from Serratula tinctoria. Plant Physiol. 134(4): 1366-76.
Kornblatt JA, Muzac I, Lim Y, Ahn JH and Ibrahim RK. (2004) Role of Serine 286 in cosubstrate binding and catalysis of a flavonol O-methyltransferase. Biochem. Cell. Biol. 82: 531-537.
Kornblatt JA, Marchal S, Rezaei H and Balny C. (2004) Characterization of a complex formed between human plasminogen and recombinant sheep prion: pressure and thermal sensitivity of complex formation. Cell Mol Biol (Noisy-le-grand) 50(4): 387-96.
Lam K, Dayanandan S and Ibrahim RK. (2004) Phylogenomic analysis of plant O-methyltransferases. In “Polyphenols Communications” Hoikkala A, Soiudinsalo O, eds, University of Helsinki Press, 22, 497-498.
Ouellet M, Aitken SM, English AM and Percival MD. (2004) Aromatic hydroxamic acids and hydrazides as inhibitors of the peroxidase activity of prostaglandin H2 synthase-2. Arch. Biochem. Biophys. 431(1): 107-18.
Petriv OI, Tang L, Titorenko VI and Rachubinski RA. (2004) A new definition for the consensus sequence of the peroxisome targeting signal type 2. J. Mol. Biol. 341: 119-134.
Tao L and English AM. (2004) Protein S-glutathiolation triggered by decomposed S-nitrosoglutathione. Biochemistry 43(13): 4028-38.
Tsang A. (2004) Genomic Approaches to Identifying Fungal Enzymes for the Forest Industry. Genomics for Future Forests.First Canadian Forest Genomics Symposium. 55-58. Natural Resources Canada.
Titorenko VI and Rachubinski R.A. (2004) The peroxisome: orchestrating important developmental decisions from inside the cell. J. Cell Biol. 164: 641-645.
Yang H, Ahn JH, Ibrahim RK, Lee S and Lim Y. (2004) The three-dimensional structure of Arabidopsis thaliana O-methyltransferase predicted by homology-based modelling. J. Mol. Graph. Model. 23(1): 77-87.

2003

Aitken SM, Ouellet M, Percival MD and English AM. (2003) Mechanism of horseradish peroxidase inactivation by benzhydrazide: a critical evaluation of arylhydrazides as peroxidase inhibitors. Biochem. J. 375(Pt 3): 613-21.
Barth G, Beckerich JM, Dominguez A, Kerscher S, Ogrydziak D, Titorenko VI and Gaillardin C. (2003) Functional genetics of Yarrowia lipolytica. In: Functional Genetics of Industrial Yeasts. Series: Topics in Current Genetics, Vol. 2, ed. J.H. de Winde. Springer-Verlag Heidelberg, Germany, pp. 227-272.
Chirwa NT and Herrington MB. (2003) CsgD, a regulator of curli and cellulose synthesis, also regulates serine hydroxymethyltransferase synthesis in Escherichia coli K-12. Microbiology 149: 525-535.
Dodard SG, Renoux AY, Powlowski J and Sunahara GI. (2003) Lethal and subchronic effects of 2,4,6-trinitrotoluene (TNT) on Enchytraeus albidus in spiked artificial soil. Ecotoxicol. Environ. Saf. 54(2): 131-8.
Gidda SK, Miersch O, Levitin A, Schmidt J, Wasternack C and Varin L. (2003) Biochemical and molecular characterization of a hydroxyjasmonate sulfotransferase from Arabidopsis thaliana. J. Biol. Chem. 278(20): 17895-900.
Guo T, Kit YY, Nicaud JM, Le Dall MT, Sears SK, Vali H, Chan H, Rachubinski RA and Titorenko VI. (2003) Peroxisome division is regulated by a signal from inside the peroxisome. J. Cell Biol. 162: 1255-1266.
Kornblatt JA, Marchal S, Rezaei H, Kornblatt MJ, Balny C, Lange R, Debey MP, Hui Bon Hoa G, Marden MC and Grosclaude J. (2003) The fate of the prion protein in the prion/plasminogen complex. Biochem. Biophys. Res. Commun. 305(3): 518-22.
Kornblatt JA, Hill BC and Marden MC. (2003) The influence of temperature and osmolyte on the catalytic cycle of cytochrome c oxidase. Eur. J. Biochem. 270(2): 253-60.
Manjasetty BA, Powlowski J and Vrielink A. (2003) Crystal structure of a bifunctional aldolase-dehydrogenase: sequestering a reactive and volatile intermediate. Proc. Nat. Acad. Sci. U.S.A. 100(12): 6992-7.
Ndong C, Anzellotti D, Ibrahim RK, Huner NP and Sarhan F. (2003) Daphnetin methylation by a novel O-methyltransferase is associated with cold acclimation and photosystem II excitation pressure in rye. J. Biol. Chem. 278(9): 6854-61.
Papp R, Ekiel I and English AM. (2003) ESI-MS and FTIR studies of the interaction between the second PDZ domain of hPTP1E and target peptides. Biochem. Cell. Biol. 81(2): 71-80.
Roemer T, Jiang B, Davison J, Ketela T, Veillette K, Breton A, Tandia F, Linteau A, Sillaots S, Marta C, Martel N, Veronneau S, Lemieux S, Kauffman S, Becker J, Storms R, Boone C and Bussey H. (2003) Large-scale essential gene identification in Candida albicans and applications to antifungal drug discovery. Mol. Microbiol. 50(1): 167-81.
Romeo AA, Capobianco JA and English AM. (2003) Superoxide dismutase targets NO from GSNO to Cysbeta93 of oxyhemoglobin in concentrated but not dilute solutions of the protein. J. Am. Chem. Soc. 125(47): 14370-8.
Tao L and English AM. (2003) Mechanism of S-nitrosation of recombinant human brain calbindin D28K. Biochemistry 42(11):3326-34.
Tsaprailis G and English AM. (2003) Different pathways of radical translocation in yeast cytochrome c peroxidase and its W191F mutant on reaction with H(2)O(2) suggest an antioxidant role. J. Biol. Inorg. Chem. 8(3): 248-55.
Wright PJ and English AM. (2003) Scavenging with TEMPO* to identify peptide- and protein-based radicals by mass spectrometry: advantages of spin scavenging over spin trapping. J. Am. Chem. Soc. 125(28): 8655-65.

2002

Akhter S, Vignini A, Wen Z, English AM, Wang PG and Mutus B (2002) Evidence for S-Nitrosothiol-dependent Changes in Fibrinogen that do not Involve Transnitrosation or Thiolation. Proc Natl Acad Sci USA 99: 9172-9177.
Cadieux E, Vrajmasu V, Achim C, Powlowski J and Munck E. (2002) Biochemical, Mossbauer, and EPR studies of the diiron cluster of phenol hydroxylase from Pseudomonas sp. strain CF 600. Biochemistry 41(34): 10680-91.
Charron JB, Breton G, Danyluk J, Muzac I, Ibrahim RK and Sarhan F. (2002) Molecular and biochemical characterization of a cold-regulated phosphoethanolamine N-methyltransferase from wheat. Plant Physiol. 129(1): 363-73.
Galazzo DE, Dayanandan S, Marcogliese D and McLaughlin JD. (2002) Molecular systematics of some North American species of Diplostomum (Digenea) based on rDNA sequence data and comparisons with European congeners. Canadian Journal of Zoology 80: 2207-2217.
Giaever G, Chu AM, Ni L, Connelly C, Riles L, Veronneau S, Dow S, Lucau-Danila A, Anderson K, Andre B, Arkin AP, Astromoff A, El-Bakkoury M, Bangham R, Benito R, Brachat S, Campanaro S, Curtiss M, Davis K, Deutschbauer A, Entian KD, Flaherty P, Foury F, Garfinkel DJ, Gerstein M, Gotte D, Guldener U, Hegemann JH, Hempel S, Herman Z, Jaramillo DF, Kelly DE, Kelly SL, Kotter P, LaBonte D, Lamb DC, Lan N, Liang H, Liao H, Liu L, Luo C, Lussier M, Mao R, Menard P, Ooi SL, Revuelta JL, Roberts CJ, Rose M, Ross-Macdonald P, Scherens B, Schimmack G, Shafer B, Shoemaker DD, Sookhai-Mahadeo S, Storms RK, Strathern JN, Valle G, Voet M, Volckaert G, Wang CY, Ward TR, Wilhelmy J, Winzeler EA, Yang Y, Yen G, Youngman E, Yu K, Bussey H, Boeke JD, Snyder M, Philippsen P, Davis RW and Johnston M. (2002) Functional profiling of the Saccharomyces cerevisiae genome. Nature 418(6896): 387-91.
Hanic-Joyce PJ and Joyce PB. (2002) Characterization of a gene encoding tRNA nucleotidyltransferase from Candida glabrata. Yeast 19(16): 1399-411.
Heng J and English AM (2002) Quantitative Analysis of the Yeast Proteome by Incorporation of Isotopically Labeled Leucine. J Proteome Res 1: 345-350.
Jain RK, Chang WT, Geetha C, Joyce PB and Gorr SU. (2002) In vitro aggregation of the regulated secretory protein chromogranin A. Biochem. J. 368(Pt 2): 605-10.
Jiang H and English AM. (2002) Quantitative analysis of the yeast proteome by incorporation of isotopically labeled leucine. J. Proteome Res. Jul-Aug;1(4): 345-50.
Kornblatt JA and Kornblatt MJ. (2002) The effects of osmotic and hydrostatic pressures on macromolecular systems.Biochim. Biophys. Acta. 1595(1-2): 30-47.
Kornblatt JA and Kornblatt MJ. (2002) Water as it applies to the function of enzymes. Int. Rev. Cytol. 215: 49-73.
Kornblatt JA and Kornblatt MJ. (2002) Water as it applies to the function of enzymes. In: Molecular Mechanisms of Water Transport (Zeuthen T. and Stein W., eds.), Academic Press New York, pp. 49-73.
Petriv OI, Pilgrim DB, Rachubinski RA and Titorenko VI. (2002) RNA interference of peroxisome-related genes in C. elegans: a new model for human peroxisomal disorders. Physiol. Genomics 10: 79-91.
Romeo AA, Capobianco JA and English AM. (2002) Heme nitrosylation of deoxyhemoglobin by s-nitrosoglutathione requires copper. J Biol. Chem. 277(27): 24135-41.
Tao L, Murphy ME and English AM. (2002) S-nitrosation of Ca(2+)-loaded and Ca(2+)-free recombinant calbindin D(28K) from human brain. Biochemistry 41(19): 6185-92.
Titorenko VI, Nicaud JM, Wang H, Chan H and Rachubinski RA. (2002) Acyl-CoA oxidase is imported as a heteropentameric, cofactor-containing complex into peroxisomes of Yarrowia lipolytica. J. Cell Biol. 156: 481-494.
Toubin C, Yeung DY, English AM and Peslherbe GH. (2002) Theoretical evidence that Cu(I) complexation promotes degradation of S-nitrosothiols. J. Am. Chem. Soc. 124(50): 14816-7.

2001

Aitken SM, Turnbull JL, Percival MD and English AM. (2001) Thermodynamic analysis of the binding of aromatic hydroxamic acid analogues to ferric horseradish peroxidase. Biochemistry 40(46): 13980-9.
English AM and Wilcox DE. (2001) Effects of metal ions on the oxidation and nitrosation of cysteine residues in proteins and enzymes. Met. Ions Biol. Syst. 38: 313-50.
Filosa A, Wang Y, Ismail AA and English AM. (2001) Two-dimensional infrared correlation spectroscopy as a probe of sequential events in the thermal unfolding of cytochromes c. Biochemistry 40(28): 8256-63.
Filosa A and English AM. (2001) Mass spectral analysis of protein-based radicals using DBNBS. Nonradical adduct formation versus spin trapping. J. Biol. Chem. 276(24): 21022-7.
Gaudet P, MacWilliams H and Tsang A. (2001) Inducible expression of exogenous genes in Dictyostelium discoideum using the ribonucleotide reductase promoter. Nucleic Acids Res. 29(2): E5
Gorr SU, Jain RK, Kuehn U, Joyce PB and Cowley DJ. (2001) Comparative sorting of neuroendocrine secretory proteins: a search for common ground in a mosaic of sorting models and mechanisms. Mol. Cell. Endocrinol. 172(1-2): 1-6.
Harris TJ, Awrey DE, Cox BJ, Ravandi A, Tsang A and Siu CH. (2001) Involvement of a triton-insoluble floating fraction in Dictyostelium cell-cell adhesion. J. Biol. Chem. 276(21): 18640-8.
Jain RK, Joyce PB, Molinete M, Halban PA and Gorr SU. (2001) Oligomerization of green fluorescent protein in the secretory pathway of endocrine cells. Biochem. J. 360(Pt 3): 645-9.
Kornblatt JA, Rajotte I and Heitz F. (2001) Reaction of canine plasminogen with 6-aminohexanoate: a thermodynamic study combining fluorescence, circular dichroism, and isothermal titration calorimetry. Biochemistry 40(12): 3639-47.
Lee J, Filosa S, Bonvin J, Guyon S, Aponte RA and Turnbull JL. (2001) Expression, purification, and characterization of recombinant purine nucleoside phosphorylase from Escherichia coli. Protein Expr. Purif. 22(2): 180-8.
MacWilliams H, Gaudet P, Deichsel H, Bonfils C and Tsang A. (2001) Biphasic expression of rnrB in Dictyostelium discoideum suggests a direct relationship between cell cycle control and cell differentiation. Differentiation 67(1-2): 12-24.
Manjasetty BA, Croteau N, Powlowski J and Vrielink A. (2001) Crystallization and preliminary X-ray analysis of dmpFG-encoded 4-hydroxy-2-ketovalerate aldolase--aldehyde dehydrogenase (acylating) from Pseudomonas sp. strain CF600. Acta Crystallogr. D. Biol. Crystallogr. 57(Pt 4): 582-5.
Mohana GS, Shaanker RU, Ganeshaiah KN and Dayanandan S. (2001) Genetic relatedness among developing seeds and intra fruit seed abortion in Dalbergia sissoo (Fabaceae). Am. J. Bot. 88(7): 1181-1188.
Rajora OP, Rahman MH, Dayanandan S and Mosseler A. (2001) Isolation, characterization, inheritance and linkage of microsatellite DNA markers in white spruce (Picea glauca) and their usefulness in other spruce species. Molecular and General Genetics 264: 871-883.
Romeo AA, Filosa A, Capobianco JA and English AM. (2001) Metal chelators inhibit S-nitrosation of Cys beta 93 in oxyhemoglobin. J. Am. Chem. Soc. 123(8): 1782-3.
Secko DM, Khosla M, Gaudet P, Tsang A, Spiegelman GB and Weeks G. (2001) RasG regulates discoidin gene expression during Dictyostelium growth. Exp. Cell. Res. 266(1): 135-41.
Shen W, Gomez-Cadenas A, Routly EL, Ho TH, Simmonds JA and Gulick PJ. (2001) The salt stress-inducible protein kinase gene, Esi47, from the salt-tolerant wheatgrass Lophopyrum elongatum is involved in plant hormone signaling. Plant Physiol.125(3): 1429-41.
Stacy EA, Dayanandan S, Dancik BP and Khasa PD. (2001) Microsatellite DNA markers for the Sri Lankan rainforest tree species, Shorea cordifolia (Dipterocarpaceae) and cross-species amplification in S. megistophylla. Molecular Ecology Notes1: A20.
Wright PJ and English AM. (2001) Buffer-anion-dependent Ca2+ leaching from horseradish peroxidase at low pH. J. Biol. Inorg. Chem. 6(4): 348-58.

2000

Anzellotti D and Ibrahim RK. (2000) Novel flavonol 2-oxoglutarate dependent dioxygenase: affinity purification, characterization, and kinetic properties. Arch. Biochem. Biophys. 382(2): 161-72.
Bantignies B, Seguin J, Muzac I, Dedaldechamp F, Gulick PJ and Ibrahim RK. (2000) Direct evidence for ribonucleolytic activity of a PR10-like protein from white lupin roots. Plant Molecular Biology 42: 871-881.
Cowley DJ, Moore YR, Darling DS, Joyce PBM and Gorr SU. (2000) N- and C- terminal domains direct cell-type specific sorting of chromagranin A to secretory granules. Journal of Biological Chemistry 275: 7743-7748.
Deng N, Hanic-Joyce PJ and Joyce PBM. (2000) Isolation and characterization of a gene encoding tRNA nucleotidyltransferase from Kluyveromyces lactis. Yeast 16(10): 945-952.
Filosa A and English AM. (2000) Probing local thermal stabilities of bovine, horse, and tuna ferricytochromes c at pH 7. J. Biol. Inorg. Chem. 5(4): 448-54.
Ibrahim RK. (2000) Phenylpropanoid metabolism. In: Encyclopedia of Life Sciences, Macmillan, Article #1912.
Ibrahim RK. (2000) Flavanoids. In: Encyclopedia of Life Sciences, Macmillan, Article #3068.
Ibrahim RK and Muzac I. (2000) The Methyltransferase gene superfamily: a tree with multiple branches. In: Recent Advances in Phytochemistry. Vol. 34. Evolution of Metabolic Pathways. Edited by Romeo, J.T., Ibrahim, R.K., Varin, L. and De Luca, V. pp. 349–384. Pergamon, New York.
Imbeault NYR, Powlowski JB, Colbert CL, Bolin JT and Eltis L. (2000) Steady-state kinetic characterization and crystallization of a PCB-transforming dioxygenase. Journal of Biological Chemistry 275: 12430-7.
Jain RK, Joyce PB and Gorr SU. (2000) Aggregation chaperones enhance aggregation and storage of secretory proteins in endocrine cells. J. Biol. Chem. 275(35): 27032-6.
Katagiri Y, Ibrahim RK and Tahara S. (2000) HPLC analysis of white lupin isoflavonoids. Biosci. Biotechnol. Biochem. 64(6):1118-25.
Kornblatt JA. (2000) Understanding the fluorescence changes of human plasminogen when it binds the ligand, 6-aminohexanoate: a synthesis. Biochim. Biophys. Acta. 1481(1): 1-10.
Molinette M, Lilla V, Jain R, Joyce PBM, Gorr SU, Ravazzola M and Halban PA. (2000) Trafficking of non-regulated secretory proteins in insulin secreting (INS-1) cells. Diabetalogia 43(9): 1157-64.
Muzac I, Wang J, Anzelotti D, Zhang H and Ibrahim RK. (2000) Functional expression of an Arabidopus cDNA clone encoding a flavanoid 3'-O-methyltransferase, and characterization of the gene product. Arch. Biochem. Biophys. 375: 385-388.
Rahman MH, Dayanandan S and Rajora OP. (2000) Microsatellite DNA markers in Populus tremuloides. Genome 43: 293-297.
Vedadi M, Barriault D, Sylvestre M and Powlowski J. (2000) Active site residues of cis-2, 3-dihydro-2, 3-dihydroxybiphenyl dehydrogenase from C. testosteroni strain B-356. Biochemistry 39: 5028-34.

1999

Barriault D, Vedadi M, Powlowski J and Sylvestre M. (1999) Cis-2, 3 dihydro-2, 3-dihydroxybiphenyl dehydrogenase and cis-1, 2-dihydro-1,2-dihydroxynaphathalene dehydrogenase. Biochemical Biophysical Research Communication 260: 181-187.
Bonfils C, Gaudet P and Tsang A. (1999) Identification of cis-regulatory and trans-acting factors regulating the expression of the gene encoding the small subunit of ribonucleotide reductase in Dictyostelium discoideum. Journal of Biological Chemistry16: 20384-20390.
Cadieux E and Powlowski J. (1999) Characterization of active and inactive forms of the phenol hydroxylase stimulatory protein DmpM. Biochemistry 38: 10714-22.
Christendat D and Turnbull JL. (1999) Identifying groups Involved in the binding of prephenate to prephenate dehydrogenase from Escherichia coli. Biochemistry 38: 4782-4793.
Filosa A, Ismail AA and English AM. (1999) FTIR-monitored thermal titration reveals different mechanisms for the alkaline isomerization of tuna compared to horse and bovine cytochromes c. J. Biol. Inorg. Chem. 4(6): 717-26.
Gaudet P and Tsang A. (1999) Regulation of the ribonucleotide reductase small subunit gene by DNA-damaging agents in Dictyostelium discoideum. Nucleic Acids Research 27: 3042-3048.
Kornblatt JA, Kornblatt MJ, Clery C and Balny C. (1999) The effects of hydrostatic pressure on the conformation of plasminogen. Eur. J. Biochem. 265(1): 120-6.
Kornblatt JA, Kornblatt MJ, Lange R, Mombelli E and Guillemette JG. (1999) The individual tyrosines of proteins: their spectra may or may not differ from those in water or other solvents. Biochim. Biophys. Acta 1431(1): 238-48.
Marsolais F, Laviolette M, Kakuta Y, Negishi M, Pedersen LC, Auger M and Varin L. (1999) 3'-Phosphoadenosine 5'-phosphosulfate binding site of flavonol 3-sulfotransferase studied by affinity chromatography and 31P NMR. Biochemistry.38(13): 4066-71.
Munro EM, Climie S, Vandenberg E and Storms RK. (1999) Deletion of eukaryote-specific inserts in thymidylate synthase ofSaccharomyces cerevisiae: In vitro and in vivo effects on enzyme activity. Biochimica et Biophysica Acta 1430: 1-13.
Powlowski J and Sahlman L. (1999) Reactivity of the two essential cysteine residues of the periplasmic mercuric ion binding protein, MerP. Journal of Biological Chemistry 274: 33320-33326.
Rouleau M, Marsolais F, Richard M, Nicolle L, Voigt B, Adam G and Varin L. (1999) Inactivation of brassinosteroid biological activity by a salicylate-inducible steroid sulfotransferase from Brassica napus. J. Biol. Chem. 274(30): 20925-30.
Sahlman L, Hagglof E and Powlowski J. (1999) Roles of the four cysteine residues in the function of the integral inner membrane Hg2+-binding protein, MerC. Biochemical Biophysical Research Communication 255: 307-311.
Storms RK. (1999) Genome-wide strategies for studying gene function using model systems. (Refereed book chapter) inOrganization of the prokaryotic genome p347-365 R. Charlebois editor. American Society for Microbiology Press Washington DC.
Winzeler EA, Shoemaker DD, Astromoff A, Liang H, Anderson K, Andre B, Bangham R, Benito R, Boeke JD, Bussey H, Chu AM, Connelly C, Davis K, Dietrich F, Dow SW, El Bakkoury M, Foury F, Friend SH, Gentalen E, Giaever G, Hegemann JH, Jones T, Laub M, Liao H, Liebundguth N, Lockhart DJ, Lucau-Danila A, Lussier M, M'Rabet N, Menard P, Mittmann M, Pai C, Rebischung C, Revuelta JL, Riles L, Roberts CJ, Ross-MacDonald P, Scherens B, Snyder M, Sookhai-Mahadeo S, Storms RK, Veronneau S, Voet M, Volckaert G, Ward TR, Wysocki R, Yen GS, Yu K, Zimmermann K, Philippsen P, Johnston M, and Davis RW. (1999) Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science285: 901-906.

Although the following publications pre-date the inception of the CSFG, the research presented therein contributed significantly to the knowledge base upon which the Centre was founded.

1996 - 1998

Barton AB, Bussey H, Storms RK and Kaback DB. (1997) Molecular cloning of chromosome I DNA from Saccharomyces cerevisiae: characterization of the 54 kb right terminal CDC15-FLO1-PHO11 region. Yeast 13(13): 1251-63.
Bussey H, Storms RK, Ahmed A, Albermann K, Allen E, Ansorge W, Araujo R, Aparicio A, Barrell B, Badcock K, Benes V, Botstein D, Bowman S, Bruckner M, Carpenter J, Cherry JM, Chung E, Churcher C, Coster F, Davis K, Davis RW, Dietrich FS, Delius H, DiPaolo T and Hani J. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome XVI. Nature387(6632 Suppl): 103-5.
Christendat D, Saridakis VC and Turnbull JL. (1998) Use of site-directed mutagenesis to identify residues specific for each reaction catalyzed by chorismate mutase-prephenate dehydrogenase from Escherichia coli. Biochemistry 37(45): 15703-12.
Downing TA and Storms RK. (1996) Molecular analysis of UFE1, a Saccharomyces cerevisiae gene essential for spore formation and vegetative growth. Curr. Genet. 30(5): 396-403.
Gauthier A, Gulick PJ and Ibrahim RK. (1998) Characterization of two cDNA clones which encode O-methyltransferases for the methylation of both flavanoid and phenylpropanoid compounds. Arch. Biochem. Biophys. 351: 243-249.
Hanic-Joyce PJ and Joyce PB. (1998) A high-copy-number ADE2-bearing plasmid for transformation of Candida glabrata.Gene 211(2): 395-400.
Hein P, Powlowski J, Barriault D, Hurtubise Y, Ahmad D and Sylvestre M. (1998) Biphenyl-associated meta-cleavage dioxygenases from Comamonas testosteroni B-356. Can. J. Microbiol. 44(1): 42-9.
Kornblatt JA. (1998) The water channel of cytochrome c oxidase: inferences from inhibitor studies. Biophys. J.. 75(6): 3127-3.
Kornblatt JA, Kornblatt MJ, Rajotte I, Hoa GH and Kahn PC. (1998) Thermodynamic volume cycles for electron transfer in the cytochrome c oxidase and for the binding of cytochrome c to cytochrome c oxidase. Biophys J. 75(1): 435-44.
Lussier M, Sdicu AM, Winnett E, Vo DH, Sheraton J, Dusterhoft A, Storms RK and Bussey H. (1997) Completion of the Saccharomyces cerevisiae genome sequence allows identification of KTR5, KTR6 and KTR7 and definition of the nine-membered KRE2/MNT1 mannosyltransferase gene family in this organism. Yeast 13(3): 267-74.
Marsolais F and Varin L. (1998) Recent developments in the study of the structure-function relationship of flavonol sulfotransferases. Chem. Biol. Interact. 109(1-3): 117-22.
Schleiff E and Turnbull JL. (1998) Characterization of the N-terminal targeting signal binding domain of the mitochondrial outer membrane receptor, Tom20. Biochemistry 37(38): 13052-8.
Schleiff E and Turnbull JL. (1998) Functional and structural properties of the mitochondrial outer membrane receptor Tom20.Biochemistry 37(38): 13043-51.
Seguin J, Muzac I and Ibrahim RK. (1998) Purification and immunological characterization of a recombinant trimethylflavonol 3'-O-methyltransferase. Phytochemistry 49(2): 319-25.
Storms RK, Wang Y, Fortin N, Hall J, Vo DH, Zhong WW, Downing T, Barton AB, Kaback DB, Su Y and Bussey H. (1997) Analysis of a 103 kbp cluster homology region from the left end of Saccharomyces cerevisiae chromosome I. Genome 40(1):151-64.
Tsang A, Bonfils C, Czaikaa G, Shtevia A and Grant C. (1996) A prespore-specific gene of Dictyostelium discoideum encodes the small subunit of ribonucleotide reductase Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression 1309 (1-2): 100-108.
Ushinsky SC, Bussey H, Ahmed AA, Wang Y, Friesen J and Storms RK. (1997) Functional analysis of a 38 kilobase region on chromosome XVI in Saccharomyces cerevisiae. Genes Funct. 1(4): 273-84.
Ushinsky SC, Bussey H, Ahmed AA, Wang Y, Friesen J, Williams BA and Storms RK. (1997) Histone H1 in Saccharomyces cerevisiae. Yeast 13(2): Y151-61.
Williams BA, Sillaots S, Tsang A and Storms R. (1996) Isolation by genetic complementation of two differentially expressed genes for beta-isopropylmalate dehydrogenase from Aspergillus niger. Curr. Genet. 30(4): 305-11.

Centre for Structural and Functional Genomics