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Concordia University Concordia celebrates 50 years!
Concordia University Concordia celebrates 50 years!

Centre for Structural and Functional Genomics

Centre for Structural and Functional Genomics

Publications

Through the use of our core facility or knowledge base, the CSFG has significantly contributed to a wide variety of research projects as demonstrated by the list of publications below.

2023
  • Najeh, S., Zandi, K., Perreault, J., & Kharma, N. (2023). Computational design and experimental verification of pseudoknotted ribozymes. RNA (New York, N.Y.). doi:10.1261/rna.079148.122
  • Mehta, O., Vijay, A., Gohir, S. A., Kelly, T., Zhang, W., Doherty, M., … Valdes, A. M. (2023). Serum Metabolome Analysis identified amino-acid metabolism associated with pain in people with symptomatic knee Osteoarthritis - a cross-sectional study. The Journal of Pain: Official Journal of the American Pain Society. doi:10.1016/j.jpain.2023.02.023
  • Pontarelli, A., & Wilds, C. J. (2023). Oligonucleotides containing C5-propynyl modified arabinonucleic acids: Synthesis, biophysical and antisense properties. Chembiochem: A European Journal of Chemical Biology, e202300068. doi:10.1002/cbic.202300068
  • Walsh, D. A., Rathbone, J., Akin-Akinyosoye, K., Fernandes, G. S., Valdes, A. M., McWilliams, D. F., … Ferguson, E. (2023). How people with knee pain understand why their pain changes or remains the same over time: A qualitative study. Osteoarthritis and Cartilage Open, 5(2), 100345. doi:10.1016/j.ocarto.2023.100345
  • Pontarelli, A., Liu, J. T., Oh, J. K., & Wilds, C. J. (2023). Preparation of a convertible spacer containing a disulfide group for versatile functionalization of oligonucleotides. Current Protocols, 3(2), e691. doi:10.1002/cpz1.691
  • Nortey, J., Tsang, A., Lopez, S., Gebreegziabher, E., Keenan, J. D., Lietman, T., & Gonzales, J. A. (2023). Central corneal subbasal nerve plexus abnormalities in Sjögren disease: A pilot study. Cornea. doi:10.1097/ICO.0000000000003248
  • Kaushik, P., Bharti, K., & Lee, J. S. (2023). Identification of the genes involved in stomatal development via epidermal phenotype scoring. Journal of Visualized Experiments: JoVE, (191). doi:10.3791/64899
  • Jager, K., Orozco-Hidalgo, M. T., Springstein, B. L., Joly-Smith, E., Papazotos, F., McDonough, E., … Potvin-Trottier, L. (2023). Measuring prion propagation in single bacteria elucidates mechanism of loss. BioRxiv.Org: The Preprint Server for Biology. doi:10.1101/2023.01.11.523042
  • Mohideen, F. I., & Kwan, D. H. (2023). A ‘biphasic glycosyltransferase high-throughput screen’ identifies novel anthraquinone glycosides in the diversification of phenolic natural products. The Journal of Biological Chemistry, 299(3), 102931. doi:10.1016/j.jbc.2023.102931
  • Oliva, A., Onana, V. E., Garner, R. E., Kraemer, S. A., Fradette, M., Walsh, D. A., & Huot, Y. (2023). Geospatial analysis reveals a hotspot of fecal bacteria in Canadian prairie lakes linked to agricultural non-point sources. Water Research, 231(119596), 119596. doi:10.1016/j.watres.2023.119596
  • Collins, J. T., Harwood, R. H., Cowley, A., Di Lorito, C., Ferguson, E., Minicucci, M. F., … Gladman, J. R. F. (2023). Chronic pain in people living with dementia: challenges to recognising and managing pain, and personalising intervention by phenotype. Age and Ageing, 52(1). doi:10.1093/ageing/afac306
  • Derba-Maceluch, M., Mitra, M., Hedenström, M., Liu, X., Gandla, M. L., Barbut, F. R., … Mellerowicz, E. J. (2023). Xylan glucuronic acid side chains fix suberin-like aliphatic compounds to wood cell walls. The New Phytologist, 238(1), 297–312. doi:10.1111/nph.18712
  • Galambo, D., & Bergdahl, A. (2023). Physiological levels of cardiolipin acutely affect mitochondrial respiration in vascular smooth muscle cells. Current Research in Physiology, 6(100097), 100097. doi:10.1016/j.crphys.2022.100097
  • Kékedy-Nagy, L., Perry, J. M., Little, S. R., Llorens, O. Y., & Shih, S. C. C. (2023). An electrochemical aptasensor for Δ9-tetrahydrocannabinol detection in saliva on a microfluidic platform. Biosensors & Bioelectronics, 222(114998), 114998. doi:10.1016/j.bios.2022.114998
  • Ali, D. A., Domínguez Mercado, L., Findlay, B. L., Badia, A., & DeWolf, C. (2023). Opposites attract: Electrostatically driven loading of antimicrobial peptides into phytoglycogen nanocarriers. Langmuir: The ACS Journal of Surfaces and Colloids, 39(1), 53–63. doi:10.1021/acs.langmuir.2c01794
  • Asadi, P., Milev, M. P., Saint-Dic, D., Gamberi, C., & Sacher, M. (2023). Vitamin B5, a coenzyme A precursor, rescues TANGO2 deficiency disease-associated defects in Drosophila and human cells. Journal of Inherited Metabolic Disease, 46(2), 358–368. doi:10.1002/jimd.12579
  • Lu, H., Li, W., Whiteway, M., Wang, H., Zhu, S., Ji, Z., … Jiang, Y. (2023). A small molecule inhibitor of Erg251 makes Fluconazole fungicidal by inhibiting the synthesis of the 14α-methylsterols. MBio, 14(1), e0263922. doi:10.1128/mbio.02639-22
  • Iwabuchi, S. J., Drabek, M. M., Cottam, W. J., Tadjibaev, A., Mohammadi-Nejad, A.-R., Sotiropoulos, S., … Auer, D. P. (2023). Medio-dorsal thalamic dysconnectivity in chronic knee pain: A possible mechanism for negative affect and pain comorbidity. The European Journal of Neuroscience, 57(2), 373–387. doi:10.1111/ejn.15880
  • Ouadhi, S., López, D. M. V., Mohideen, F. I., & Kwan, D. H. (2023). Engineering the enzyme toolbox to tailor glycosylation in small molecule natural products and protein biologics. Protein Engineering, Design & Selection: PEDS, 36. doi:10.1093/protein/gzac010
  • Orabi, M. A. A., Orabi, E. A., Abdel-Sattar, E.-S., English, A. M., Hatano, T., & Elimam, H. (2023). Structural determination and anticholinesterase assay of C-glycosidic ellagitannins from Lawsonia inermis leaves: A study supported by DFT calculations and molecular docking. Fitoterapia, 164(105360), 105360. doi:10.1016/j.fitote.2022.105360
  • Park, G. W., Shin, S., Kim, S. J., Lee, J.-S., Moon, M., & Min, K. (2023). Rice straw-derived lipid production by HMF/furfural-tolerant oleaginous yeast generated by adaptive laboratory evolution. Bioresource Technology, 367(128220), 128220. doi:10.1016/j.biortech.2022.128220
  • Capo, E., Peterson, B. D., Kim, M., Jones, D. S., Acinas, S. G., Amyot, M., … Gionfriddo, C. M. (2023). A consensus protocol for the recovery of mercury methylation genes from metagenomes. Molecular Ecology Resources, 23(1), 190–204. doi:10.1111/1755-0998.13687
2022
  • Galambo, D., & Bergdahl, A. (2023). Physiological levels of cardiolipin acutely affect mitochondrial respiration in vascular smooth muscle cells. Current Research in Physiology, 6(100097), 100097. doi:10.1016/j.crphys.2022.100097
  • Gwinnutt, J. M., Norton, S., Hyrich, K. L., Lunt, M., Combe, B., Rincheval, N., … Verstappen, S. M. M. (2022). Influence of social support, financial status, and lifestyle on the disparity between inflammation and disability in rheumatoid arthritis. Arthritis Care & Research. doi:10.1002/acr.24996
  • Grevesse, T., Guéguen, C., Onana, V. E., & Walsh, D. A. (2022). Degradation pathways for organic matter of terrestrial origin are widespread and expressed in Arctic Ocean microbiomes. Microbiome, 10(1), 237. doi:10.1186/s40168-022-01417-6
  • Kékedy-Nagy, L., Perry, J. M., Little, S. R., Llorens, O. Y., & Shih, S. C. C. (2023). An electrochemical aptasensor for Δ9-tetrahydrocannabinol detection in saliva on a microfluidic platform. Biosensors & Bioelectronics, 222(114998), 114998. doi:10.1016/j.bios.2022.114998
  • Li, J., Chroumpi, T., Garrigues, S., Kun, R. S., Meng, J., Salazar-Cerezo, S., … de Vries, R. P. (2022). The sugar metabolic model of Aspergillus niger can only be reliably transferred to fungi of its phylum. Journal of Fungi (Basel, Switzerland), 8(12), 1315. doi:10.3390/jof8121315
  • Ali, D. A., Domínguez Mercado, L., Findlay, B. L., Badia, A., & DeWolf, C. (2023). Opposites attract: Electrostatically driven loading of antimicrobial peptides into phytoglycogen nanocarriers. Langmuir: The ACS Journal of Surfaces and Colloids, 39(1), 53–63. doi:10.1021/acs.langmuir.2c01794
  • Asadi, P., Milev, M. P., Saint-Dic, D., Gamberi, C., & Sacher, M. (2023). Vitamin B5, a coenzyme A precursor, rescues TANGO2 deficiency disease-associated defects in Drosophila and human cells. Journal of Inherited Metabolic Disease, 46(2), 358–368. doi:10.1002/jimd.12579
  • Zhao, H., Karppi, J., Nguyen, T. T. M., Bellemare, A., Tsang, A., Master, E., & Tenkanen, M. (2022). Characterization of a novel AA3_1 xylooligosaccharide dehydrogenase from Thermothelomyces myriococcoides CBS 398.93. Biotechnology for Biofuels and Bioproducts, 15(1), 135. doi:10.1186/s13068-022-02231-w
  • Lu, H., Li, W., Whiteway, M., Wang, H., Zhu, S., Ji, Z., … Jiang, Y. (2023). A small molecule inhibitor of Erg251 makes Fluconazole fungicidal by inhibiting the synthesis of the 14α-methylsterols. MBio, 14(1), e0263922. doi:10.1128/mbio.02639-22
  • Miyake, C. Y., Lay, E. J., Soler-Alfonso, C., Glinton, K. E., Houck, K. M., Tosur, M., … Lalani, S. R. (2022). Natural history of TANGO2 deficiency disorder: Baseline assessment of 73 patients. Genetics in Medicine: Official Journal of the American College of Medical Genetics, 25(4), 100352. doi:10.1016/j.gim.2022.11.020
  • Iwabuchi, S. J., Drabek, M. M., Cottam, W. J., Tadjibaev, A., Mohammadi-Nejad, A.-R., Sotiropoulos, S., … Auer, D. P. (2023). Medio-dorsal thalamic dysconnectivity in chronic knee pain: A possible mechanism for negative affect and pain comorbidity. The European Journal of Neuroscience, 57(2), 373–387. doi:10.1111/ejn.15880
  • Samlali, K., Alves, C. L., Jezernik, M., & Shih, S. C. C. (2022). Droplet digital microfluidic system for screening filamentous fungi based on enzymatic activity. Microsystems & Nanoengineering, 8(1), 123. doi:10.1038/s41378-022-00456-1
  • Orabi, M. A. A., Orabi, E. A., Abdel-Sattar, E.-S., English, A. M., Hatano, T., & Elimam, H. (2023). Structural determination and anticholinesterase assay of C-glycosidic ellagitannins from Lawsonia inermis leaves: A study supported by DFT calculations and molecular docking. Fitoterapia, 164(105360), 105360. doi:10.1016/j.fitote.2022.105360
  • Ozugergin, I., & Piekny, A. (2022). Diversity is the spice of life: An overview of how cytokinesis regulation varies with cell type. Frontiers in Cell and Developmental Biology, 10, 1007614. doi:10.3389/fcell.2022.1007614
  • Husser, M. C., Ozugergin, I., Resta, T., Martin, V. J. J., & Piekny, A. J. (2022). Cytokinetic diversity in mammalian cells is revealed by the characterization of endogenous anillin, Ect2 and RhoA. Open Biology, 12(11), 220247. doi:10.1098/rsob.220247
  • Ahmadi, F., Simchi, M., Perry, J. M., Frenette, S., Benali, H., Soucy, J.-P., … Shih, S. C. C. (2022). Integrating machine learning and digital microfluidics for screening experimental conditions. Lab on a Chip, 23(1), 81–91. doi:10.1039/d2lc00764a
  • Shahina, Z., Al Homsi, R., Price, J. D. W., Whiteway, M., Sultana, T., & Dahms, T. E. S. (2022). Rosemary essential oil and its components 1,8-cineole and α-pinene induce ROS-dependent lethality and ROS-independent virulence inhibition in Candida albicans. PloS One, 17(11), e0277097. doi:10.1371/journal.pone.0277097
  • Dhaliwal, J. S., Panozzo, C., Benard, L., & Zerges, W. (2022). An RNA granule for translation quality control in Saccharomyces cerevisiae. Journal of Cell Science, 135(23). doi:10.1242/jcs.260388
  • Selim, A. S., Perry, J. M., Nasr, M. A., Pimprikar, J. M., & Shih, S. C. C. (2022). A synthetic biosensor for detecting putrescine in beef samples. ACS Applied Bio Materials, 5(11), 5487–5496. doi:10.1021/acsabm.2c00824
  • Kraemer, S. A., Barbosa da Costa, N., Oliva, A., Huot, Y., & Walsh, D. A. (2022). A resistome survey across hundreds of freshwater bacterial communities reveals the impacts of veterinary and human antibiotics use. Frontiers in Microbiology, 13, 995418. doi:10.3389/fmicb.2022.995418
  • Brunetti, S. C., Arseneault, M. K. M., & Gulick, P. J. (2022). The caleosin CLO7 and its role in the heterotrimeric G-protein signalling network. Journal of Plant Physiology, 279(153841), 153841. doi:10.1016/j.jplph.2022.153841
  • Park, G. W., Shin, S., Kim, S. J., Lee, J.-S., Moon, M., & Min, K. (2023). Rice straw-derived lipid production by HMF/furfural-tolerant oleaginous yeast generated by adaptive laboratory evolution. Bioresource Technology, 367(128220), 128220. doi:10.1016/j.biortech.2022.128220
  • Allard, P., Papazotos, F., & Potvin-Trottier, L. (2022). Microfluidics for long-term single-cell time-lapse microscopy: Advances and applications. Frontiers in Bioengineering and Biotechnology, 10, 968342. doi:10.3389/fbioe.2022.968342
  • Lee, J. S., Kim, S. H., Lee, J. Y., Ye, J. B., Sul, Y. H., Seok, J., … Kim, Y. (2022). Intestinal obstruction caused by small bowel entrapment within a lumbar fracture: A case report. Medicine, 101(42), e31273. doi:10.1097/MD.0000000000031273
  • Olajide, O. J., La Rue, C., Bergdahl, A., & Chapman, C. A. (2022). Inhibiting amyloid beta (1-42) peptide-induced mitochondrial dysfunction prevents the degradation of synaptic proteins in the entorhinal cortex. Frontiers in Aging Neuroscience, 14, 960314. doi:10.3389/fnagi.2022.960314
  • Ogliari, G., Ryg, J., Andersen-Ranberg, K., Scheel-Hincke, L. L., Collins, J. T., Cowley, A., … Masud, T. (2022). Association of pain and risk of falls in community-dwelling adults: a prospective study in the Survey of Health, Ageing and Retirement in Europe (SHARE). European Geriatric Medicine, 13(6), 1441–1454. doi:10.1007/s41999-022-00699-1
  • Hansen, J. Y., Markello, R. D., Tuominen, L., Nørgaard, M., Kuzmin, E., Palomero-Gallagher, N., … Misic, B. (2022). Correspondence between gene expression and neurotransmitter receptor and transporter density in the human brain. NeuroImage, 264(119671), 119671. doi:10.1016/j.neuroimage.2022.119671
  • Kim, Y., Lee, J. Y., Lee, J. S., Ye, J.-B., Kim, S. H., Sul, Y. H., … Choi, H. (2022). Endovascular treatment of traumatic renal artery pseudoaneurysm with a Stanford type A intramural haematoma: A case report. World Journal of Clinical Cases, 10(27), 9760–9767. doi:10.12998/wjcc.v10.i27.9760
  • Lee, S., Rim Lee, Y., Lee, W.-H., Youn Lee, S., Moon, M., Woo Park, G., … Lee, J.-S. (2022). Valorization of CO2 to β-farnesene in Rhodobacter sphaeroides. Bioresource Technology, 363(127955), 127955. doi:10.1016/j.biortech.2022.127955
  • Gowler, P. R. W., Turnbull, J., Shahtaheri, M., Walsh, D. A., Barrett, D. A., & Chapman, V. (2022). Interplay between cellular changes in the knee joint, circulating lipids and pain behaviours in a slowly progressing murine model of osteoarthritis. European Journal of Pain (London, England), 26(10), 2213–2226. doi:10.1002/ejp.2036
  • Chang, Y., Wang, Y., Mondo, S., Ahrendt, S., Andreopoulos, W., Barry, K., … Spatafora, J. W. (2022). Evolution of zygomycete secretomes and the origins of terrestrial fungal ecologies. IScience, 25(8), 104840. doi:10.1016/j.isci.2022.104840
  • Fekete, E., Bíró, V., Márton, A., Bakondi-Kovács, I., Németh, Z., Sándor, E., … Karaffa, L. (2022). Bioreactor as the root cause of the ‘manganese effect’ during Aspergillus niger citric acid fermentations. Frontiers in Bioengineering and Biotechnology, 10, 935902. doi:10.3389/fbioe.2022.935902
  • Kozlov, G., Mattijssen, S., Jiang, J., Nyandwi, S., Sprules, T., Iben, J. R., … Gehring, K. (2022). Structural basis of 3’-end poly(A) RNA recognition by LARP1. Nucleic Acids Research, 50(16), 9534–9547. doi:10.1093/nar/gkac696
  • Bettauer, V., Costa, A. C. B. P., Omran, R. P., Massahi, S., Kirbizakis, E., Simpson, S., … Hallett, M. T. (2022). A deep learning approach to capture the essence of Candida albicans morphologies. Microbiology Spectrum, 10(5), e0147222. doi:10.1128/spectrum.01472-22
  • Ouellette, S., Pakarian, P., Bin, X., & Pawelek, P. D. (2022). Evidence of an intracellular interaction between the Escherichia coli enzymes EntC and EntB and identification of a potential electrostatic channeling surface. Biochimie, 202, 159–165. doi:10.1016/j.biochi.2022.07.018
  • Liang, J., Gamarra, J. G. P., Picard, N., Zhou, M., Pijanowski, B., Jacobs, D. F., … Hui, C. (2022). Co-limitation towards lower latitudes shapes global forest diversity gradients. Nature Ecology & Evolution, 6(10), 1423–1437. doi:10.1038/s41559-022-01831-x
  • Leonov, A., Feldman, R., Piano, A., Arlia-Ciommo, A., Junio, J. A. B., Orfanos, E., … Titorenko, V. I. (2022). Diverse geroprotectors differently affect a mechanism linking cellular aging to cellular quiescence in budding yeast. Oncotarget, 13(1), 918–943. doi:10.18632/oncotarget.28256
  • Shantha, J., Reddy, A. K., Sura, A., Tsang, A., Moussa, K., Acharya, N., … Doan, T. (2022). Bilateral anterior and intermediate uveitis in SARS-CoV-2 associated multisystem inflammatory syndrome in a pediatric patient. Pediatric Rheumatology Online Journal, 20(1), 59. doi:10.1186/s12969-022-00712-8
  • Li, L., Lu, H., Zhang, X., Whiteway, M., Wu, H., Tan, S., … Jiang, Y. (2022). Baicalein acts against Candida albicans by targeting Eno1 and inhibiting glycolysis. Microbiology Spectrum, 10(4), e0208522. doi:10.1128/spectrum.02085-22
  • Marinovíc, M., Di Falco, M., Aguilar Pontes, M. V., Gorzsás, A., Tsang, A., de Vries, R. P., … Hildén, K. (2022). Comparative analysis of enzyme production patterns of lignocellulose degradation of two white rot fungi: Obba rivulosa and Gelatoporia subvermispora. Biomolecules, 12(8), 1017. doi:10.3390/biom12081017
  • Feng, Y., Zhang, Y., Li, J., Omran, R. P., Whiteway, M., & Feng, J. (2022). Transcriptional profiling of the Candida albicans response to the DNA damage agent methyl methanesulfonate. International Journal of Molecular Sciences, 23(14), 7555. doi:10.3390/ijms23147555
  • Pontarelli, A., Liu, J. T., Movasat, H., Ménard, S., Oh, J. K., & Wilds, C. J. (2022). Synthesis of a convertible linker containing a disulfide group for oligonucleotide functionalization. Organic Letters, 24(30), 5579–5583. doi:10.1021/acs.orglett.2c02149
  • Ye, J. B., Lee, J. Y., Lee, J. S., Kim, S. H., Choi, H., Kim, Y., … Choi, J. H. (2022). Observational management of Grade II or higher blunt traumatic thoracic aortic injury: 15 years of experience at a single suburban institution. International Journal of Critical Illness and Injury Science, 12(2), 101–105. doi:10.4103/ijciis.ijciis_89_21
  • Sohrabi Kashani, A., Larocque, K., Piekny, A., & Packirisamy, M. (2022). Gold nano-bio-interaction to modulate mechanobiological responses for cancer therapy applications. ACS Applied Bio Materials, 5(8), 3741–3752. doi:10.1021/acsabm.2c00230
  • Capo, E., Peterson, B. D., Kim, M., Jones, D. S., Acinas, S. G., Amyot, M., … Gionfriddo, C. M. (2023). A consensus protocol for the recovery of mercury methylation genes from metagenomes. Molecular Ecology Resources, 23(1), 190–204. doi:10.1111/1755-0998.13687
  • Choi, M. J., Choi, K. C., Lee, D. H., Jeong, H. Y., Kang, S. J., Kim, M. W., … Park, Y. S. (2022). EGF receptor-targeting cancer therapy using CD47-engineered cell-derived nanoplatforms. Nanotechnology, Science and Applications, 15, 17–31. doi:10.2147/NSA.S352038
  • Swain, S., Fernandes, G. S., Sarmanova, A., Valdes, A. M., Walsh, D. A., Coupland, C., … Zhang, W. (2022). Comorbidities and use of analgesics in people with knee pain: a study in the Nottingham Knee Pain and Health in the Community (KPIC) cohort. Rheumatology Advances in Practice, 6(2), rkac049. doi:10.1093/rap/rkac049
  • Coelho, P. P., Hesketh, G. G., Pedersen, A., Kuzmin, E., Fortier, A.-M. N., Bell, E. S., … Park, M. (2022). Endosomal LC3C-pathway selectively targets plasma membrane cargo for autophagic degradation. Nature Communications, 13(1), 3812. doi:10.1038/s41467-022-31465-3
  • Almeida, H., Tsang, A., & Diallo, A. B. (2022). Improving candidate Biosynthetic Gene Clusters in fungi through reinforcement learning. Bioinformatics (Oxford, England), 38(16), 3984–3991. doi:10.1093/bioinformatics/btac420
  • Schoettner, K., Alonso, M., Button, M., Goldfarb, C., Herrera, J., Quteishat, N., … Amir, S. (2022). Characterization of affective behaviors and motor functions in mice with a striatal-specific deletion of Bmal1 and Per2. Frontiers in Physiology, 13, 922080. doi:10.3389/fphys.2022.922080
2021
  • Lillywhite, A., Woodhams, S. G., Gonçalves, S. V., Watson, D. J. G., Li, L., Burston, J. J., … Chapman, V. (2021). Anxiety enhances pain in a model of osteoarthritis and is associated with altered endogenous opioid function and reduced opioid analgesia. Pain Reports (Baltimore, Md.), 6(4), e956. doi:10.1097/PR9.0000000000000956
  • Liczner, C., Hanna, C. C., Payne, R. J., & Wilds, C. J. (2022). Generation of oligonucleotide conjugates via one-pot diselenide-selenoester ligation-deselenization/alkylation. Chemical Science (Royal Society of Chemistry: 2010), 13(2), 410–420. doi:10.1039/d1sc04937b
  • Park, G. W., Moon, M., Park, J.-H., Jo, J.-H., Kim, H. J., Lee, J. Y., … Lee, J.-S. (2022). Improving hydrogen production by pH adjustment in pressurized gas fermentation. Bioresource Technology, 346(126605), 126605. doi:10.1016/j.biortech.2021.126605
  • Jaunky, D. B., Larocque, K., Husser, M. C., Liu, J. T., Forgione, P., & Piekny, A. (2021). Characterization of a recently synthesized microtubule-targeting compound that disrupts mitotic spindle poles in human cells. Scientific Reports, 11(1), 23665. doi:10.1038/s41598-021-03076-3
  • Lee, J. Y., Sul, Y. H., Kim, S. H., Ye, J. B., Lee, J. S., Choi, H., … Choi, J. H. (2021). Risk factors for ventilator-associated pneumonia in trauma patients with torso injury: a retrospective single-center study. The Journal of International Medical Research, 49(12), 3000605211061029. doi:10.1177/03000605211061029
  • Kapadia, J. B., Kharma, N., Davis, A. N., Kamel, N., & Perreault, J. (2022). Toehold-mediated strand displacement to measure released product from self-cleaving ribozymes. RNA (New York, N.Y.), 28(2), 263–273. doi:10.1261/rna.078823.121
  • Mohammad, K., Orfanos, E., & Titorenko, V. I. (2021). Caloric restriction causes a distinct reorganization of the lipidome in quiescent and non-quiescent cells of budding yeast. Oncotarget, 12(24), 2351–2374. doi:10.18632/oncotarget.28133
  • Garge, R. K., Cha, H. J., Lee, C., Gollihar, J. D., Kachroo, A. H., Wallingford, J. B., & Marcotte, E. M. (2021). Discovery of new vascular disrupting agents based on evolutionarily conserved drug action, pesticide resistance mutations, and humanized yeast. Genetics, 219(1). doi:10.1093/genetics/iyab101
  • Yao, S., Feng, Y., Islam, A., Shrivastava, M., Gu, H., Lu, Y., … Feng, J. (2021). Corrigendum to ‘Loss of Arp1, a putative actin-related protein, triggers filamentous and invasive growth and impairs pathogenicity in Candida albicans’ (Computational and Structural Biotechnology Journal, 2020, 18: 4002-4015). Computational and Structural Biotechnology Journal, 19, 5943–5945. doi:10.1016/j.csbj.2021.11.001
  • Park, W.-K., Min, K., Yun, J.-H., Kim, M., Kim, M.-S., Park, G. W., … Lee, J.-S. (2022). Paradigm shift in algal biomass refinery and its challenges. Bioresource Technology, 346(126358), 126358. doi:10.1016/j.biortech.2021.126358
  • Tsang, A., Kanda, P., Gottlieb, C., Virgili, G., Kantungane, L., & Coupland, S. (2022). A novel 5-ring multifocal electroretinography stimulus for detecting hydroxychloroquine retinal toxicity. Documenta Ophthalmologica. Advances in Ophthalmology, 144(2), 117–124. doi:10.1007/s10633-021-09858-4
  • Mohideen, F. I., Nguyen, L. H., Richard, J. D., Ouadhi, S., & Kwan, D. H. (2022). In vitro reconstitution of the dTDP-l-daunosamine biosynthetic pathway provides insights into anthracycline glycosylation. ACS Chemical Biology, 17(12), 3331–3340. doi:10.1021/acschembio.1c00646
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  • Wang, L., Zhu, T., Rodriguez, J. C., Deal, K. R., Dubcovsky, J., McGuire, P. E., … Dvorak, J. (2021). Aegilops tauschii genome assembly Aet v5.0 features greater sequence contiguity and improved annotation. G3 (Bethesda, Md.), 11(12). doi:10.1093/g3journal/jkab325
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  • Kakon, G., Mohamadi, A.-A. K., Levtova, N., Maurice-Ventouris, M. E. I., Benoit, E.-A., Chouchou, F., … Dover, G. (2021). Elevated heart rate and pain during a cold pressor test correlates to pain catastrophizing. Applied Psychophysiology and Biofeedback, 46(4), 359–366. doi:10.1007/s10484-021-09520-4
  • Davydov, D. R., Jung, C., Petsko, G. A., Sligar, S. G., & Kornblatt, J. A. (2021). A pathfinder in high-pressure bioscience: In memoriam of Gaston Hui Bon Hoa. Biology, 10(8), 778. doi:10.3390/biology10080778
  • Garrigues, S., Kun, R. S., Peng, M., Gruben, B. S., Benoit Gelber, I., Mäkelä, M., & de Vries, R. P. (2021). The cultivation method affects the transcriptomic response of Aspergillus niger to growth on sugar beet pulp. Microbiology Spectrum, 9(1), e0106421. doi:10.1128/Spectrum.01064-21
  • Min, K., Kim, H., Park, H. J., Lee, S., Jung, Y. J., Yoon, J. H., … Joo, J. C. (2021). Improving the catalytic performance of xylanase from Bacillus circulans through structure-based rational design. Bioresource Technology, 340(125737), 125737. doi:10.1016/j.biortech.2021.125737
  • Liu, J. T., Jaunky, D. B., Larocque, K., Chen, F., Mckibbon, K., Sirouspour, M., … Forgione, P. (2021). Design, structure-activity relationship study and biological evaluation of the thieno[3,2-c]isoquinoline scaffold as a potential anti-cancer agent. Bioorganic & Medicinal Chemistry Letters, 52(128327), 128327. doi:10.1016/j.bmcl.2021.128327
  • Koh, S. P., Pham, N. P., & Piekny, A. (2022). Seeing is believing: tools to study the role of Rho GTPases during cytokinesis. Small GTPases, 13(1), 211–224. doi:10.1080/21541248.2021.1957384
  • Sul, Y. H., Lee, J. Y., Kim, S. H., Ye, J. B., Lee, J. S., Yoon, S. Y., & Choi, J. H. (2021). Risk factors for acute kidney injury in critically ill patients with torso injury: A retrospective observational single-center study. Medicine, 100(29), e26723. doi:10.1097/MD.0000000000026723
  • Kim, S., Jung, P. Y., Lee, J. S., Hwang, S., Sohn, J. H., Yoon, Y., … Eom, Y. W. (2021). Cultured human skeletal muscle satellite cells exhibit characteristics of mesenchymal stem cells and play anti-inflammatory roles through prostaglandin E2 and hepatocyte growth factors. Cell Biology International, 45(12), 2443–2451. doi:10.1002/cbin.11688
  • Perry, J. M., Soffer, G., Jain, R., & Shih, S. C. C. (2021). Expanding the limits towards ‘one-pot’ DNA assembly and transformation on a rapid-prototype microfluidic device. Lab on a Chip, 21(19), 3730–3741. doi:10.1039/d1lc00415h
  • Jangra, R., Brunetti, S. C., Wang, X., Kaushik, P., Gulick, P. J., Foroud, N. A., … Lee, J. S. (2021). Duplicated antagonistic EPF peptides optimize grass stomatal initiation. Development (Cambridge, England), 148(16). doi:10.1242/dev.199780
  • Nomikos, P. A., Hall, M., Fuller, A., Millar, B., Ogollah, R., Valdes, A., … Abhishek, A. (2021). Fidelity assessment of nurse-led non-pharmacological package of care for knee pain in the package development phase of a feasibility randomised controlled trial based in secondary care: a mixed methods study. BMJ Open, 11(7), e045242. doi:10.1136/bmjopen-2020-045242
  • Moon, M., Yeon, Y. J., Park, H. J., Park, J., Park, G. W., Kim, G.-H., … Min, K. (2021). Chemoenzymatic valorization of agricultural wastes into 4-hydroxyvaleric acid via levulinic acid. Bioresource Technology, 337(125479), 125479. doi:10.1016/j.biortech.2021.125479
  • Lee, J., Park, H. J., Moon, M., Lee, J.-S., & Min, K. (2021). Recent progress and challenges in microbial polyhydroxybutyrate (PHB) production from CO2 as a sustainable feedstock: A state-of-the-art review. Bioresource Technology, 339(125616), 125616. doi:10.1016/j.biortech.2021.125616
  • Kuzmin, E., Taylor, J. S., & Boone, C. (2022). Retention of duplicated genes in evolution. Trends in Genetics: TIG, 38(1), 59–72. doi:10.1016/j.tig.2021.06.016
  • Agrawal, D., Tsang, A., & Chadha, B. S. (2021). Economizing the lignocellulosic hydrolysis process using heterologously expressed auxiliary enzymes feruloyl esterase D (CE1) and β-xylosidase (GH43) derived from thermophilic fungi Scytalidium thermophilum. Bioresource Technology, 339(125603), 125603. doi:10.1016/j.biortech.2021.125603
  • Jeong, D.-M., Oh, S. H., Choo, H., Choi, Y.-S., Kim, S.-H., Lee, J.-S., & Hwang, E.-H. (2021). Root proximity of the anchoring miniscrews of orthodontic miniplates in the mandibular incisal area: Cone-beam computed tomographic analysis. Korean Journal of Orthodontics, 51(4), 231–240. doi:10.4041/kjod.2021.51.4.231
  • Kun, R. S., Garrigues, S., Di Falco, M., Tsang, A., & de Vries, R. P. (2021b). The chimeric GaaR-XlnR transcription factor induces pectinolytic activities in the presence of D-xylose in Aspergillus niger. Applied Microbiology and Biotechnology, 105(13), 5553–5564. doi:10.1007/s00253-021-11428-2
  • McWilliams, D. F., Thankaraj, D., Jones-Diette, J., Morgan, R., Ifesemen, O. S., Shenker, N. G., & Walsh, D. A. (2021). The efficacy of systemic glucocorticosteroids for pain in rheumatoid arthritis: a systematic literature review and meta-analysis. Rheumatology (Oxford, England), 61(1), 76–89. doi:10.1093/rheumatology/keab503
  • Morel, E., Cui, L., Zerges, W., & Wilkinson, K. J. (2021). Mixtures of rare earth elements show antagonistic interactions in Chlamydomonas reinhardtii. Environmental Pollution (Barking, Essex: 1987), 287(117594), 117594. doi:10.1016/j.envpol.2021.117594
  • Ifesemen, O. S., McWilliams, D. F., Ferguson, E., Wakefield, R., Akin-Akinyosoye, K., Wilson, D., … Walsh, D. A. (2021). Central Aspects of Pain in Rheumatoid Arthritis (CAP-RA): protocol for a prospective observational study. BMC Rheumatology, 5(1), 23. doi:10.1186/s41927-021-00187-2
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  • Min, K., Kim, H. T., Park, S. J., Lee, S., Jung, Y. J., Lee, J.-S., … Joo, J. C. (2021). Improving the organic solvent resistance of lipase a from Bacillus subtilis in water-ethanol solvent through rational surface engineering. Bioresource Technology, 337(125394), 125394. doi:10.1016/j.biortech.2021.125394
  • Kun, R. S., Garrigues, S., Di Falco, M., Tsang, A., & de Vries, R. P. (2021a). Blocking utilization of major plant biomass polysaccharides leads Aspergillus niger towards utilization of minor components. Microbial Biotechnology, 14(4), 1683–1698. doi:10.1111/1751-7915.13835
  • Kieft, K., Zhou, Z., Anderson, R. E., Buchan, A., Campbell, B. J., Hallam, S. J., … Anantharaman, K. (2021). Ecology of inorganic sulfur auxiliary metabolism in widespread bacteriophages. Nature Communications, 12(1), 3503. doi:10.1038/s41467-021-23698-5
  • Evdokias, G., Semper, C., Mora-Ochomogo, M., Di Falco, M., Nguyen, T. T. M., Savchenko, A., … Benoit-Gelber, I. (2021). Identification of a novel biosynthetic gene cluster in Aspergillus niger using comparative genomics. Journal of Fungi (Basel, Switzerland), 7(5), 374. doi:10.3390/jof7050374
  • Lentini, M., Scalia, J., Lebel, F. B., Touma, F., Jhajj, A., Darlington, P. J., & Dover, G. (2021). Association between pain catastrophizing and pain and cardiovascular changes during a cold-pressor test in athletes. Journal of Athletic Training, 56(5), 473–483. doi:10.4085/1062-6050-016-20
  • Liczner, C., Duke, K., Juneau, G., Egli, M., & Wilds, C. J. (2021). Beyond ribose and phosphate: Selected nucleic acid modifications for structure-function investigations and therapeutic applications. Beilstein Journal of Organic Chemistry, 17, 908–931. doi:10.3762/bjoc.17.76
  • Choi, M. J., Choi, J. H., Park, Y. S., Park, K.-S., & Lee, J. S. (2021). Identification of genes involved in neuronal cell death and recovery over time in rat axotomy and neurorrhaphy models through RNA sequencing. Molecular and Cellular Neurosciences, 113(103628), 103628. doi:10.1016/j.mcn.2021.103628
  • Demirci, E., Arentshorst, M., Yilmaz, B., Swinkels, A., Reid, I. D., Visser, J., … Ram, A. F. J. (2021). Genetic characterization of mutations related to conidiophore stalk length development in Aspergillus niger laboratory strain N402. Frontiers in Genetics, 12, 666684. doi:10.3389/fgene.2021.666684
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