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2014
  • Arlia-Ciommo, A., Leonov, A., Piano, A., Svistkova, V., & Titorenko, V. I. (2014). Cell-autonomous mechanisms of chronological aging in the yeast Saccharomyces cerevisiae. Microbial Cell (Graz, Austria), 1(6), 163–178. doi:10.15698/mic2014.06.152
  • Mann, P. A., McLellan, C. A., Koseoglu, S., Si, Q., Kuzmin, E., Flattery, A., … Roemer, T. (2015). Chemical genomics-based antifungal drug discovery: Targeting glycosylphosphatidylinositol (GPI) precursor biosynthesis. ACS Infectious Diseases, 1(1), 59–72. doi:10.1021/id5000212
  • Piano, A., & Titorenko, V. I. (2015). The intricate interplay between mechanisms underlying aging and cancer. Aging and Disease, 6(1), 56–75. doi:10.14336/AD.2014.0209
  • O’Flaherty, D. K., McManus, F. P., Noronha, A. M., & Wilds, C. J. (2014). Synthesis of building blocks and oligonucleotides containing {T}O4-alkylene-O4{T} interstrand cross-links. Et al [Current Protocols in Nucleic Acid Chemistry], 55(1), 5.13.1-19. doi:10.1002/0471142700.nc0513s55
  • Titorenko, V. I., & Rachubinski, R. A. (2014). Origin and spatiotemporal dynamics of the peroxisomal endomembrane system. Frontiers in Physiology, 5, 493. doi:10.3389/fphys.2014.00493
  • Ko, N. R., Cheong, J., Noronha, A., Wilds, C. J., & Oh, J. K. (2015). Reductively-sheddable cationic nanocarriers for dual chemotherapy and gene therapy with enhanced release. Colloids and Surfaces. B, Biointerfaces, 126, 178–187. doi:10.1016/j.colsurfb.2014.12.010
  • Almeida, H., Meurs, M.-J., Kosseim, L., Butler, G., & Tsang, A. (2014). Machine learning for biomedical literature triage. PloS One, 9(12), e115892. doi:10.1371/journal.pone.0115892
  • Natvig, D. O., Taylor, J. W., Tsang, A., Hutchinson, M. I., & Powell, A. J. (2015). Mycothermus thermophilus gen. et comb. nov., a new home for the itinerant thermophile Scytalidium thermophilum (Torula thermophila). Mycologia, 107(2), 319–327. doi:10.3852/13-399
  • Tabatabaei Shafiei, M., Carvajal Gonczi, C. M., Rahman, M. S., East, A., François, J., & Darlington, P. J. (2014). Detecting glycogen in peripheral blood mononuclear cells with periodic acid schiff staining. Journal of Visualized Experiments: JoVE, (94). doi:10.3791/52199
  • Shpilberg, K. A., Esses, S. J., Fowkes, M. E., Chari, A., Sacher, M., & Naidich, T. P. (2015). Imaging of extraosseous intracranial and intraspinal multiple myeloma, including central nervous system involvement. Clinical Imaging, 39(2), 213–219. doi:10.1016/j.clinimag.2014.11.017
  • Choudhury, Baharul I., Khan, M. L., & Dayanandan, S. (2014). Genetic relatedness among indigenous rice varieties in the Eastern Himalayan region based on nucleotide sequences of the Waxy gene. BMC Research Notes, 7(1), 953. doi:10.1186/1756-0500-7-953
  • Shivaprakash, K. N., Ramesha, B. T., Uma Shaanker, R., Dayanandan, S., & Ravikanth, G. (2014). Genetic structure, diversity and long term viability of a medicinal plant, Nothapodytes nimmoniana Graham. (Icacinaceae), in protected and non-protected areas in the Western Ghats biodiversity hotspot. PloS One, 9(12), e112769. doi:10.1371/journal.pone.0112769
  • Arlia-Ciommo, A., Piano, A., Leonov, A., Svistkova, V., & Titorenko, V. I. (2014). Quasi-programmed aging of budding yeast: a trade-off between programmed processes of cell proliferation, differentiation, stress response, survival and death defines yeast lifespan. Cell Cycle (Georgetown, Tex.), 13(21), 3336–3349. doi:10.4161/15384101.2014.965063
  • Richard, V. R., Beach, A., Piano, A., Leonov, A., Feldman, R., Burstein, M. T., … Titorenko, V. I. (2014). Mechanism of liponecrosis, a distinct mode of programmed cell death. Cell Cycle (Georgetown, Tex.), 13(23), 3707–3726. doi:10.4161/15384101.2014.965003
  • Kathiresan, M., Martins, D., & English, A. M. (2014). Respiration triggers heme transfer from cytochrome c peroxidase to catalase in yeast mitochondria. Proceedings of the National Academy of Sciences of the United States of America, 111(49), 17468–17473. doi:10.1073/pnas.1409692111
  • Chen, B. K., Staff, N. P., Knight, A. M., Nesbitt, J. J., Butler, G. W., Padley, D. J., … Windebank, A. J. (2015). A safety study on intrathecal delivery of autologous mesenchymal stromal cells in rabbits directly supporting Phase I human trials. Transfusion, 55(5), 1013–1020. doi:10.1111/trf.12938
  • Tsang, A. (2014). Fungal genomics. Briefings in Functional Genomics, 13(6), 421–423. doi:10.1093/bfgp/elu041
  • Tebbji, F., Chen, Y., Richard Albert, J., Gunsalus, K. T. W., Kumamoto, C. A., Nantel, A., … Whiteway, M. (2014). A functional portrait of Med7 and the mediator complex in Candida albicans. PLoS Genetics, 10(11), e1004770. doi:10.1371/journal.pgen.1004770
  • Isserlin, R., Merico, D., Wang, D., Vuckovic, D., Bousette, N., Gramolini, A. O., … Emili, A. (2015). Systems analysis reveals down-regulation of a network of pro-survival miRNAs drives the apoptotic response in dilated cardiomyopathy. Molecular BioSystems, 11(1), 239–251. doi:10.1039/c4mb00265b
  • Koury, O. H., Scheede-Bergdahl, C., & Bergdahl, A. (2014). The role of casein in the development of hypercholesterolemia. Journal of Physiology and Biochemistry, 70(4), 1021–1028. doi:10.1007/s13105-014-0365-9
  • Khalil, S., Jaworski, I., & Pawelek, P. D. (2014). Identification of a surface glutamine residue (Q64) of Escherichia coli EntA required for interaction with EntE. Biochemical and Biophysical Research Communications, 453(3), 625–630. doi:10.1016/j.bbrc.2014.09.131
  • Ye, Z., Zheng, Y., Li, B., Borrusch, M. S., Storms, R., & Walton, J. D. (2014). Enhancement of synthetic Trichoderma-based enzyme mixtures for biomass conversion with an alternative family 5 glycosyl hydrolase from Sporotrichum thermophile. PloS One, 9(10), e109885. doi:10.1371/journal.pone.0109885
  • Cui, H., Kong, D., Wei, P., Hao, Y., Torii, K. U., Lee, J. S., & Li, J. (2014). SPINDLY, ERECTA, and its ligand STOMAGEN have a role in redox-mediated cortex proliferation in the Arabidopsis root. Molecular Plant, 7(12), 1727–1739. doi:10.1093/mp/ssu106
  • Kaur, A. P., Nocek, B. P., Xu, X., Lowden, M. J., Leyva, J. F., Stogios, P. J., … Savchenko, A. (2015). Functional and structural diversity in GH62 α-L-arabinofuranosidases from the thermophilic fungus Scytalidium thermophilum. Microbial Biotechnology, 8(3), 419–433. doi:10.1111/1751-7915.12168
  • Miotto, L. S., de Rezende, C. A., Bernardes, A., Serpa, V. I., Tsang, A., & Polikarpov, I. (2014). The characterization of the endoglucanase Cel12A from Gloeophyllum trabeum reveals an enzyme highly active on β-glucan. PloS One, 9(9), e108393. doi:10.1371/journal.pone.0108393
  • Arlia-Ciommo, A., Piano, A., Svistkova, V., Mohtashami, S., & Titorenko, V. I. (2014). Mechanisms underlying the anti-aging and anti-tumor effects of lithocholic bile acid. International Journal of Molecular Sciences, 15(9), 16522–16543. doi:10.3390/ijms150916522
  • Praveenkumar, R., Kim, B., Choi, E., Lee, K., Park, J.-Y., Lee, J.-S., … Oh, Y.-K. (2014). Improved biomass and lipid production in a mixotrophic culture of Chlorella sp. KR-1 with addition of coal-fired flue-gas. Bioresource Technology, 171, 500–505. doi:10.1016/j.biortech.2014.08.112
  • Morgenstern, I., Powlowski, J., & Tsang, A. (2014). Fungal cellulose degradation by oxidative enzymes: from dysfunctional GH61 family to powerful lytic polysaccharide monooxygenase family. Briefings in Functional Genomics, 13(6), 471–481. doi:10.1093/bfgp/elu032
  • Richard, V. R., Bourque, S. D., & Titorenko, V. I. (2014). Metabolomic and lipidomic analyses of chronologically aging yeast. Methods in Molecular Biology (Clifton, N.J.), 1205, 359–373. doi:10.1007/978-1-4939-1363-3_21
  • Kuzmin, E., Sharifpoor, S., Baryshnikova, A., Costanzo, M., Myers, C. L., Andrews, B. J., & Boone, C. (2014). Synthetic genetic array analysis for global mapping of genetic networks in yeast. Methods in Molecular Biology (Clifton, N.J.), 1205, 143–168. doi:10.1007/978-1-4939-1363-3_10
  • Chakraborty, P. K., Schmitz-Abe, K., Kennedy, E. K., Mamady, H., Naas, T., Durie, D., … Fleming, M. D. (2014). Mutations in TRNT1 cause congenital sideroblastic anemia with immunodeficiency, fevers, and developmental delay (SIFD). Blood, 124(18), 2867–2871. doi:10.1182/blood-2014-08-591370
  • Longstaff, H., & Secko, D. M. (2016). Assessing the quality of a deliberative democracy mini-public event about advanced biofuel production and development in Canada. Public Understanding of Science (Bristol, England), 25(2), 252–261. doi:10.1177/0963662514545014
  • Chapanian, R., Kwan, D. H., Constantinescu, I., Shaikh, F. A., Rossi, N. A. A., Withers, S. G., & Kizhakkedathu, J. N. (2014). Enhancement of biological reactions on cell surfaces via macromolecular crowding. Nature Communications, 5(1), 4683. doi:10.1038/ncomms5683
  • Wang, Z., Du, S., Dayanandan, S., Wang, D., Zeng, Y., & Zhang, J. (2014). Phylogeny reconstruction and hybrid analysis of populus (Salicaceae) based on nucleotide sequences of multiple single-copy nuclear genes and plastid fragments. PloS One, 9(8), e103645. doi:10.1371/journal.pone.0103645
  • McManus, F. P., & Wilds, C. J. (2014). O(6) -alkylguanine-DNA alkyltransferase-mediated repair of O(4) -alkylated 2’-deoxyuridines. Chembiochem: A European Journal of Chemical Biology, 15(13), 1966–1977. doi:10.1002/cbic.201402169
  • Stoppiello, L. A., Mapp, P. I., Wilson, D., Hill, R., Scammell, B. E., & Walsh, D. A. (2014). Structural associations of symptomatic knee osteoarthritis. Arthritis & Rheumatology, 66(11), 3018–3027. doi:10.1002/art.38778
  • Brunet, S., & Sacher, M. (2014a). Are all multisubunit tethering complexes bona fide tethers? Traffic (Copenhagen, Denmark), 15(11), 1282–1287. doi:10.1111/tra.12200
  • Gruninger, R. J., Puniya, A. K., Callaghan, T. M., Edwards, J. E., Youssef, N., Dagar, S. S., … Elshahed, M. S. (2014). Anaerobic fungi (phylum Neocallimastigomycota): advances in understanding their taxonomy, life cycle, ecology, role and biotechnological potential. FEMS Microbiology Ecology, 90(1), 1–17. doi:10.1111/1574-6941.12383
  • Kwan, D. H., & Withers, S. G. (2014). [Review of Periplasmic de-acylase helps bacteria don their biofilm coat]. Proceedings of the National Academy of Sciences of the United States of America, 111(30), 10904–10905. doi:10.1073/pnas.1410789111
  • Reid, I., O’Toole, N., Zabaneh, O., Nourzadeh, R., Dahdouli, M., Abdellateef, M., … Tsang, A. (2014). SnowyOwl: accurate prediction of fungal genes by using RNA-Seq and homology information to select among ab initio models. BMC Bioinformatics, 15(1), 229. doi:10.1186/1471-2105-15-229
  • Budak, S. O., Zhou, M., Brouwer, C., Wiebenga, A., Benoit, I., Di Falco, M., … de Vries, R. P. (2014). A genomic survey of proteases in Aspergilli. BMC Genomics, 15(1), 523. doi:10.1186/1471-2164-15-523
  • Foshag, D., Campbell, C., & Pawelek, P. D. (2014). The C-glycosyltransferase IroB from pathogenic Escherichia coli: identification of residues required for efficient catalysis. Biochimica et Biophysica Acta, 1844(9), 1619–1630. doi:10.1016/j.bbapap.2014.06.010
  • Martins, D., & English, A. M. (2014). SOD1 oxidation and formation of soluble aggregates in yeast: relevance to sporadic ALS development. Redox Biology, 2, 632–639. doi:10.1016/j.redox.2014.03.005
  • Choudhury, Baharul Islam, Khan, M. L., & Dayanandan, S. (2014). Patterns of nucleotide diversity and phenotypes of two domestication related genes (OsC1 and Wx) in indigenous rice varieties in Northeast India. BMC Genetics, 15, 71. doi:10.1186/1471-2156-15-71
  • O’Flaherty, D. K., Denisov, A. Y., Noronha, A. M., & Wilds, C. J. (2014). NMR structure of an ethylene interstrand cross-linked DNA which mimics the lesion formed by 1,3-bis(2-chloroethyl)-1-nitrosourea. ChemMedChem, 9(9), 2099–2103. doi:10.1002/cmdc.201402121
  • Park, J.-Y., Nam, B., Choi, S.-A., Oh, Y.-K., & Lee, J.-S. (2014). Effects of anionic surfactant on extraction of free fatty acid from Chlorella vulgaris. Bioresource Technology, 166, 620–624. doi:10.1016/j.biortech.2014.05.098
  • Brunet, S., & Sacher, M. (2014b). In sickness and in health: the role of TRAPP and associated proteins in disease. Traffic (Copenhagen, Denmark), 15(8), 803–818. doi:10.1111/tra.12183
  • Scheede-Bergdahl, C., Bergdahl, A., Schjerling, P., Qvortrup, K., Koskinen, S. O., & Dela, F. (2014). Exercise-induced regulation of matrix metalloproteinases in the skeletal muscle of subjects with type 2 diabetes. Diabetes & Vascular Disease Research: Official Journal of the International Society of Diabetes and Vascular Disease, 11(5), 324–334. doi:10.1177/1479164114535943
  • Kolbusz, M. A., Di Falco, M., Ishmael, N., Marqueteau, S., Moisan, M.-C., Baptista, C. da S., … Tsang, A. (2014). Transcriptome and exoproteome analysis of utilization of plant-derived biomass by Myceliophthora thermophila. Fungal Genetics and Biology: FG & B, 72, 10–20. doi:10.1016/j.fgb.2014.05.006
  • Walsh, D. A., & McWilliams, D. F. (2014). Mechanisms, impact and management of pain in rheumatoid arthritis. Nature Reviews. Rheumatology, 10(10), 581–592. doi:10.1038/nrrheum.2014.64
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